Basic Information

Insect: Pieris rapae
Gene Symbol: -
Assembly: GCA_905147795.1
Location: LR990586.1:3463000-3476879[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 9.8e-05 0.0076 16.8 0.5 1 23 136 158 136 158 0.95

2 11 0.0035 0.27 11.9 3.2 1 23 164 186 164 186 0.96

3 11 0.0003 0.023 15.3 0.1 1 23 286 308 286 308 0.98

4 11 2.8 2.1e+02 2.8 0.3 2 23 315 337 314 337 0.84

5 11 0.00047 0.036 14.7 0.1 3 23 392 413 390 413 0.90

6 11 0.0038 0.3 11.8 0.2 1 23 429 451 429 451 0.96

7 11 2.4e-05 0.0019 18.7 0.2 1 23 479 501 479 501 0.98

8 11 0.00048 0.037 14.7 0.2 1 23 507 529 507 529 0.97

9 11 0.00027 0.021 15.4 0.3 1 23 535 557 535 558 0.95

10 11 0.75 58 4.6 0.0 1 23 571 593 571 593 0.92

11 11 0.0048 0.37 11.5 0.1 1 20 729 748 729 751 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	9.8e-05	0.0076	16.8	0.5	1	23	136	158	136	158	0.95
2	11	0.0035	0.27	11.9	3.2	1	23	164	186	164	186	0.96
3	11	0.0003	0.023	15.3	0.1	1	23	286	308	286	308	0.98
4	11	2.8	2.1e+02	2.8	0.3	2	23	315	337	314	337	0.84
5	11	0.00047	0.036	14.7	0.1	3	23	392	413	390	413	0.90
6	11	0.0038	0.3	11.8	0.2	1	23	429	451	429	451	0.96
7	11	2.4e-05	0.0019	18.7	0.2	1	23	479	501	479	501	0.98
8	11	0.00048	0.037	14.7	0.2	1	23	507	529	507	529	0.97
9	11	0.00027	0.021	15.4	0.3	1	23	535	557	535	558	0.95
10	11	0.75	58	4.6	0.0	1	23	571	593	571	593	0.92
11	11	0.0048	0.37	11.5	0.1	1	20	729	748	729	751	0.94

Sequence Information

Coding Sequence: ATGGAAGGGGAAGAGTTTCAGCTCCATTGGGAGTCAGAGGTTAAACCCAACACTGAAGTTTGTGAAGAAGTAACATGTGGGTTGGATAATGTACAGACAGTACCATATTCCAACATGACAGCAGAAGAACTTATGAATAATGCTGATAATATAGCTGCAGAGAATTTAATGTATTTATCTCAAGATGTTGTAAGTTACACTGACTCCACTGATATTGTAGCCGACCCTAGTGTAGAGTGTGTCACTGAAGAAGTCATTACTGATGACTGGGTTATTACTGGTGGACAGGAAAGAGTGGAGGTGCCTTTTGAACAGTTAATGAATCCTGCTCAAGATATAAAAATAGAAAATGATATTGATGTGCCTTTACCAACAGACCAGGATGAATACACAGCAATGCGGCCGTTTCCATGTGATTTTTGTTCCCGGAGATTTAGAAAGAAAGCAGCTCTTATGAACCACATGGTAGCCCATCAGAATGATAGACCACATGCATGCAACCTTTGTGGTGTTCGATATGTACGCAAGTGTGATCTTATGAATCACTTCAAGGTCCATGCTTTTATACCAGAATCAACGGAGCATATTGTTCAGGAGTATCCCAGTGATGAGGAATTGCCAGAGAGTCCAATTCTCAAGCAAAAAAAGAAAAGAGGCAGACGGAAAAAGAAACCTGAAGCTAACGGCATCCCGGATGTGAATATGACGTCAGCGCGTACGCAACAGTGGTCTCGTCGCGGGCGTACGCCCCCCAGAGCCCCCTCGCCGGCCCCTTCTCCGTCACCTCCACCTTCTCCCTCACCGCCCCCATCTCCTCCCTCTCCTCTACCGCCCCCCGCTGACCCTGCAAGGCCCTTTGTGTGTCGAACGTGTGGAGTCGGTTTCGCAAGAGAGAAAGCTTTGCAGTCGCATTCTAGGATACACGGCGGCGATTCTCCTATGGAATGTAGCGAGTGTGGGGAGCTTTGTTGGTCGCGAGATAGTTTGGCGTCGCACGCCGCACAGAAACATCCGCATCTCTCGCATTTACCCCGTTCCATGAAGCAAGAACCGTATGATGATAATTCGGGAGACGATATGGACTTCCGGTTATCACCACTAGCCCACAGCGGCAGTGACCATAGTATACGCCATGGCATGGTATACGATACGGTCCGTGGGCCGGAACTCTTCTGTCAGGATTGTGGAGTGGCCTTCCAACGCGCTGATTTGCTGAGGAGACACGTCACTGCCGCCCATAGCTACAAGCGACACGACAGCACAAGCAGTACGTGGGAGCAAGAACACACATGTGACGTGTGCGGCGAGAGTTGCCCCGACGCTCTTACGCTATTGGCCCACGCTGAAAGACATACAGAACGGCCCAGGCCTAATTCATCCAGGTTTAAGAAAATGTCAAAAGGTCAGAATGCGTCAGGCAGTAATACGAGGCAGTTTCCATGTAGAGAATGTGGCAAAGTGTTCGGTTCGCGAAGTTCTCAGCAGATCCACGTGCGTATTCATACGGGCGAACGGCCGTACGCGTGCCGTTTCTGTTGGAAGGCCTTCGCTGATGGCGGTACATTAAGAAAACATGAACGTATACACACGGGTGAAAAACCGTACGCGTGCGCAGTATGTCCACGAGCTTTCAACCAGCGAGTGGTGTTAAGGGAACACGTGAGATCGCATCACTCTGCGCCTGATCGACGGGCGAATGGTGGATACCAGTACTCATGCGCAGTTTGTGGTCGACCGATGTTAACGAGTGCGGAACTGGTCCAACATCTAATACAGCACTGTGATGAAAACACCGCTATGAAGAGGCAACCGCAGTCTGGTCCGCGCAAATACAAGCGGCGTCGTAAAGTGAAGACGGAGACACCTGCCGAGTGGGATGGGTCGCCCCCCGCGTCCCCCGTACCCCAATCCCCCTCTCCGACGCCCCCCACTCCCCCACCCGTGCCACGCAGAAGGCGACGGGCAGCCGCGGCACCCGCACCACGCCCACGCATGATACACACCTCCGAGGAGACCAGGGTTAGGACCAAACAGGTTCGAACTCGCCGACCGCCTCGTCACCCAGCCGACGACCTACGGGCTATCGCCTGTTCCCCTTCGCCGCAACCTAAAAATTCCCCTTCTCCCCCTTCTTCTGTTCCCCCTTCGCCCGGTTCACCCGAAGACGCAGATGGAGATGGACCATACAAGTGCGAAATGTGTTCGTTAGAATTCCCCCGACGCGACGCCCTCTTACTTCATGTCCCTATACATATATGA
Protein Sequence: MEGEEFQLHWESEVKPNTEVCEEVTCGLDNVQTVPYSNMTAEELMNNADNIAAENLMYLSQDVVSYTDSTDIVADPSVECVTEEVITDDWVITGGQERVEVPFEQLMNPAQDIKIENDIDVPLPTDQDEYTAMRPFPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHFKVHAFIPESTEHIVQEYPSDEELPESPILKQKKKRGRRKKKPEANGIPDVNMTSARTQQWSRRGRTPPRAPSPAPSPSPPPSPSPPPSPPSPLPPPADPARPFVCRTCGVGFAREKALQSHSRIHGGDSPMECSECGELCWSRDSLASHAAQKHPHLSHLPRSMKQEPYDDNSGDDMDFRLSPLAHSGSDHSIRHGMVYDTVRGPELFCQDCGVAFQRADLLRRHVTAAHSYKRHDSTSSTWEQEHTCDVCGESCPDALTLLAHAERHTERPRPNSSRFKKMSKGQNASGSNTRQFPCRECGKVFGSRSSQQIHVRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRANGGYQYSCAVCGRPMLTSAELVQHLIQHCDENTAMKRQPQSGPRKYKRRRKVKTETPAEWDGSPPASPVPQSPSPTPPTPPPVPRRRRRAAAAPAPRPRMIHTSEETRVRTKQVRTRRPPRHPADDLRAIACSPSPQPKNSPSPPSSVPPSPGSPEDADGDGPYKCEMCSLEFPRRDALLLHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01204294;
90% Identity: iTF_01204294; iTF_00879049; iTF_01202683; iTF_01205945; iTF_01205139; iTF_01203486;
80% Identity: -