Pbra007254.1
Basic Information
- Insect
- Pieris brassicae
- Gene Symbol
- -
- Assembly
- GCA_905147105.1
- Location
- LR989936.1:8063029-8075462[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 9.5e-05 0.0078 16.9 0.5 1 23 112 134 112 134 0.95 2 11 0.0034 0.28 12.0 3.2 1 23 140 162 140 162 0.96 3 11 0.00029 0.024 15.4 0.1 1 23 262 284 262 284 0.98 4 11 2.1 1.7e+02 3.2 0.4 2 23 291 313 290 313 0.86 5 11 0.00045 0.037 14.8 0.1 3 23 368 389 366 389 0.90 6 11 0.0037 0.31 11.9 0.2 1 23 405 427 405 427 0.96 7 11 2.3e-05 0.0019 18.8 0.2 1 23 455 477 455 477 0.98 8 11 0.00046 0.038 14.7 0.2 1 23 483 505 483 505 0.97 9 11 0.00026 0.022 15.5 0.3 1 23 511 533 511 534 0.95 10 11 0.72 60 4.7 0.0 1 23 547 569 547 569 0.92 11 11 0.0046 0.38 11.6 0.1 1 20 700 719 700 722 0.94
Sequence Information
- Coding Sequence
- ATGGAGGGCGAAGAGTTTCAGCTCCATTGGGAATCGGAGGTTAAAACAACAGAAGAACTTATAAATAATGCTGATAATATAGCTGCAGAGAATTTAATGTATTTATCTCAAGATGTTGTAACTTACACTGACTCTGCTGATATAGTAGCCGACCCTAGTGTTGAATGTGTCACTGAAGAAGTTATTACTGATGACTGGGTTATTACTGGTGGACAGGAAAGAGTGGAGGTGCCTTTTGATCAGTTAATGAATCCAGCACAAGATATAAAAATAGAAAATGATATTGATGTGCCTTTACCAACAGACCAGGATGAATACACAGCGATGCGACCGTTTCCTTGTGACTTTTGTTCCCGGAGATTTAGGAAAAAAGCAGCTCTTATGAACCACATGGTGGCGCATCAGAATGATAGACCACATGCATGTAACCTTTGTGGTGTTCGCTATGTACGCAAGTGTGATCTTATGAACCACTTCAAGGTCCATGCTTTTATACCAGAAGCAACTGAGCATATTCTTCAGGAGTATCCCAGTGATGAGGAATTGCCAGAGAGTCCACTTCTTAAGCCAAAAAAGAAAAGAGGCAGACGGAAAAAGAAACCTGAAGCTAATGGCGTCCCGGATGTGAATATGACGTCAGCGCGTACGCAACAGTGGTCCCGTCGCGGGCGTACACCACCAAGGGCCCCCTCGCCCGCCCCTTCTCCATCACCTCCACCTTCTCCCTCACCGCCCCCATCTCCTCCCTCTCCTCTACCGCCCCCCGCCGACCCAGCGAGGCCCTTTGTGTGTCGAACGTGTGGAGTCGGTTTCGCAAGAGAGAAAGCTTTGCAATCGCATTCTAGGATACACGGCGGGGATTCGCCTATAGAGTGTAGCGAGTGTGGGGAGCTTTGTTGGTCGCGAGATAGCTTAGCGTCGCACGCCTCACAGAAACATCCCCATCTCTCGCATTTACCCCGTTCCATGAAGCAAGAACCCTATGATGATAATTCAGGAGACGATATGGACTTCCGGCTATCACCACTAGCTCACAGCGGCAGTGACCATAGTATACGTCATGGCATGGTATATGATACGGTCCGTGGACCGGAACTCTTCTGTCAGGATTGTGGAGTGGCCTTCCAACGCGCTGATTTGCTGAGGAGACACGTCACTGCTGCCCATAGTTACAAGCGTCACGACAGCACAAGCAGCACGTGGGAGCAAGAACACACGTGTGACGTATGCGGCGAGAGTTGCCCCGACGCCCTTACCCTATTGGCCCACGCTGAAAGACATGCAGAACGGCCTAGGCCTAATTCATCCAGGTTTAAGAAAATGTCAAAAGGCAGGAATGCATCAGGCAGTAATATGAGGCAGTTTCCATGTAGAGAATGCGGCAAAGTGTTCGGCTCGCGAAGTTCTCAGCAGATCCACGTGCGCATTCATACGGGCGAACGGCCGTACGCGTGCCGATTCTGTTGGAAGGCCTTCGCTGATGGCGGTACATTAAGAAAACACGAACGCATACACACGGGTGAAAAACCGTACGCGTGCGCAGTGTGTCCTCGAGCTTTCAACCAGCGTGTGGTGCTAAGGGAACACGTGAGATCGCATCACTCTGCACCTGATCGACGGGCGAATGGCGGATACCAGTACTCATGCGCAGTTTGTGGTCGACCAATGTTAACGAGTGCGGAACTGGTGCAACATCTCATACAGCACTGTGATGAAAACACCGCTATGAAGAGGCAACCGCAGTCCGGTCCGCGCAAATACAAGCGACGTCGTAAAGTTAAGACGGAGGCGCCTGCCGAGTGGGACGGGTCACCTCCTGCGTCCCCCGTACCCCAATCCCCCTCTCCTTCGCCCCCCACTCCGCCACCCGCGCCCCGCAGAAGGCGACGGGCTGTGGCACCCGCACCACGCCCACGCATGATCCACACCTCCGAGGAGACCAGGGCTAGGACCAAACAGGTTCGAACTCGCCGACCGCCTCGTCACCCAGCCGACGACTTACGGGCTATCGCCTGTTCCCCTTCGCCCCAACCTAGAAATTCCCCTTCTCCTCCCTCTTCGCCCGGTTCACCCGAAGAAGCAGACGGCGACGGACCATACAAGTGCGAAATGTGTTCTCTAGAATTCCCCCGACGCGACGCCCTCTTACTTCATGTCCCTATACATATATGA
- Protein Sequence
- MEGEEFQLHWESEVKTTEELINNADNIAAENLMYLSQDVVTYTDSADIVADPSVECVTEEVITDDWVITGGQERVEVPFDQLMNPAQDIKIENDIDVPLPTDQDEYTAMRPFPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHFKVHAFIPEATEHILQEYPSDEELPESPLLKPKKKRGRRKKKPEANGVPDVNMTSARTQQWSRRGRTPPRAPSPAPSPSPPPSPSPPPSPPSPLPPPADPARPFVCRTCGVGFAREKALQSHSRIHGGDSPIECSECGELCWSRDSLASHASQKHPHLSHLPRSMKQEPYDDNSGDDMDFRLSPLAHSGSDHSIRHGMVYDTVRGPELFCQDCGVAFQRADLLRRHVTAAHSYKRHDSTSSTWEQEHTCDVCGESCPDALTLLAHAERHAERPRPNSSRFKKMSKGRNASGSNMRQFPCRECGKVFGSRSSQQIHVRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRANGGYQYSCAVCGRPMLTSAELVQHLIQHCDENTAMKRQPQSGPRKYKRRRKVKTEAPAEWDGSPPASPVPQSPSPSPPTPPPAPRRRRRAVAPAPRPRMIHTSEETRARTKQVRTRRPPRHPADDLRAIACSPSPQPRNSPSPPSSPGSPEEADGDGPYKCEMCSLEFPRRDALLLHVPIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01204294;
- 90% Identity
- iTF_01206791;
- 80% Identity
- -