Prap005141.1
Basic Information
- Insect
- Pieris rapae
- Gene Symbol
- JARID2_1
- Assembly
- GCA_905147795.1
- Location
- LR990583.1:11113250-11119491[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.4e-19 3.9e-16 59.4 0.3 7 89 140 220 135 220 0.91
Sequence Information
- Coding Sequence
- ATGATATGTGACAGTGATTCCACAGAAGAAATGGATGAGACCCTATTAATTGAAAATTCAAATTCAAGTTATATTAAACCAAATACTAGAAAGGATCGTGAGACTCGAGATCGACATACCAATAAACAAAGTCACTCTGGAGATTCAACTAGTGATGATGAAATTCCTATACGAAAGAAACAAAAGATGAGCATTTTGGAGGCACCTGTGTTTCGACCTACGGTTGATGAATTTAAAGAGCCACTAACATATATAGAGAAAATTTTACCAGAAGCGTCCAAATATGGCTTATGCAAAGTTATACCACCTGATGGATTCACACCACCCTGTAATCTTGATGGGACTATGAACTTTAATGTAACCAACCACTACGTGCAACGGATGTTCAAACGATATGGGCCAGCTGCCAAAAAGTTGACCACTTTCAAAGCCGTCTTGGCGTCGCAAAAAGTGACATTTAGGCGACCGCCACTACTAAGCGGCTTGGAAGTGGATTTAGCATATTTATTCAAGCTAGTACAGCAAATGGGTGGGCTAAAGAAGTTAACAAAAATTGTACAATGGAACAAAGTTGCTGACCAGTTAAAGTTGTGTCGTCATTTAAAAAATCCCGGTCAAAAAATTAAACAAATTTATGAAAAATATTTATTACCATATGAAGTGATGACAACGTTTGAGAAAGAAAATTTGATAGAACAGGTGGATCTTTTGTGCGAAAAAAGTCAATCGAGGATGTCTAACCGTGCACGGAGTCCTCTGCACGCACAAAGGCAAATGCTGGAGCCAGGTGACTCCACCGATAATGATTCATGTGATGAAATCTCGGCAAAAGACCATTTAATATTAAATGCCCTTGCTGAGACTGACGATTGTATCGTGCCGGGGCGATCAATGAATCTTTACGCTTTCCAAAAAGTGGCAGAAGTCGCTTCCAATGCATTTTTATCTTCTACAACTCTGAAAACAAAATCCATAGAAAAAGCATATTGGGACGTTGTCTTGTCGAGGACCAAGCATGTCTGTGTAAACGCAGCTTCCATAGACACGGGTGCCGCGGATTATGGGTTTCCAAATAATGATTCCACCGACCATTATAGTAGACATCCTTGGAACTTGAAGTGTATCAGTAGGGACATACAGAACATGTTAAGTTTCTTGGGTCCCGTGGTTGGAATGACTGCGCCCACATTGCATCTGGGAATGCTGTTCTCGACGAGTTGCTGGCACAGAGACCCTCATGGCCTCCCATGGATTGAGTATATGCATAGTGGAAAGAAGAAAGTATGGTATGGCATCGACGATTCGCAAAGCGATACATTTCGGATAGCAGTGGAACGCTTGTGCCCGGCGTTCGTTCAGAATAAATCCGTTTGGTTACCATCAGACATTGCGATGATCCCACCGGATTTATTGCAGGACTCTGTTTCTCTGTGCCGGGCTGTGCAAAATCCGGGCGAATTTATAATAGTTTGCCCAAAAGCCTATTCGTCTTCAATTGCCACGGGATACACAATATCCGAAAGTGTGTACTTCGCTACATTGTCCTGGATACATTGTCTCGGTGAAACGTTTGATACATTAAAAAGCAGTTGTGAACCAACAATGTTCTCTCTTGAGCAACTGTTGTTTGCATTCGTAAGAGATGCCCGTACGCCGCCGTCGGTTTTAAGAGCCATTGAGCCGATATTAAAAGAGGTTCTCAACAAGGAGTTCAGTAACAGACAGAAGTTGGAAGAAATGGGTTTAACTAAAGCGTGGCTAAAACCATACAAGCCTAGTGCGACAAGAGCTTGGAATGTATCCGATCAAGATGAGTGCTATATATGCCGGATGACTTTATATTTATCGAGGGTGCGAGGCGTGTTTGATAAAAACTCAGTCTTATGTCTGGAACACGCGATTAAAGTACTACAACAACCCAATAAAAGTCATCTAATAACTGAGACTAAGCGATTGTCATTCATAATTATGTACAGTACAAACGAACTTAAGGAGCTTTTGGAGTTTTTAAAAGAACGTCTAAGGAGAAACTAG
- Protein Sequence
- MICDSDSTEEMDETLLIENSNSSYIKPNTRKDRETRDRHTNKQSHSGDSTSDDEIPIRKKQKMSILEAPVFRPTVDEFKEPLTYIEKILPEASKYGLCKVIPPDGFTPPCNLDGTMNFNVTNHYVQRMFKRYGPAAKKLTTFKAVLASQKVTFRRPPLLSGLEVDLAYLFKLVQQMGGLKKLTKIVQWNKVADQLKLCRHLKNPGQKIKQIYEKYLLPYEVMTTFEKENLIEQVDLLCEKSQSRMSNRARSPLHAQRQMLEPGDSTDNDSCDEISAKDHLILNALAETDDCIVPGRSMNLYAFQKVAEVASNAFLSSTTLKTKSIEKAYWDVVLSRTKHVCVNAASIDTGAADYGFPNNDSTDHYSRHPWNLKCISRDIQNMLSFLGPVVGMTAPTLHLGMLFSTSCWHRDPHGLPWIEYMHSGKKKVWYGIDDSQSDTFRIAVERLCPAFVQNKSVWLPSDIAMIPPDLLQDSVSLCRAVQNPGEFIIVCPKAYSSSIATGYTISESVYFATLSWIHCLGETFDTLKSSCEPTMFSLEQLLFAFVRDARTPPSVLRAIEPILKEVLNKEFSNRQKLEEMGLTKAWLKPYKPSATRAWNVSDQDECYICRMTLYLSRVRGVFDKNSVLCLEHAIKVLQQPNKSHLITETKRLSFIIMYSTNELKELLEFLKERLRRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01203825;
- 90% Identity
- -
- 80% Identity
- -