Basic Information

Insect: Pieris napi
Gene Symbol: -
Assembly: GCA_905475465.1
Location: FR997708.1:1300113-1315527[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.93 80 4.4 0.9 2 19 442 459 441 463 0.86

2 16 0.0012 0.11 13.5 0.0 1 23 473 496 473 496 0.97

3 16 0.045 3.9 8.6 3.3 1 21 585 605 585 606 0.94

4 16 0.025 2.2 9.3 3.6 2 23 661 682 660 682 0.95

5 16 8.8 7.6e+02 1.3 2.7 1 23 694 718 694 718 0.84

6 16 7e-05 0.006 17.4 0.7 2 23 725 748 724 748 0.97

7 16 0.055 4.8 8.3 0.2 1 23 754 776 754 776 0.93

8 16 0.0017 0.15 13.0 3.3 1 23 782 804 782 804 0.98

9 16 0.084 7.3 7.7 0.1 2 20 815 833 814 835 0.91

10 16 0.11 9.6 7.3 0.2 1 23 910 932 910 932 0.96

11 16 2.1 1.8e+02 3.3 6.3 1 23 939 961 939 961 0.95

12 16 0.0025 0.22 12.5 1.6 1 23 994 1017 994 1017 0.94

13 16 0.0032 0.27 12.2 0.7 1 23 1024 1047 1024 1047 0.97

14 16 0.0045 0.39 11.7 0.3 2 23 1069 1091 1068 1091 0.95

15 16 0.081 7 7.7 1.5 3 23 1109 1130 1107 1130 0.94

16 16 0.00011 0.0096 16.8 0.3 1 23 1157 1180 1157 1180 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.93	80	4.4	0.9	2	19	442	459	441	463	0.86
2	16	0.0012	0.11	13.5	0.0	1	23	473	496	473	496	0.97
3	16	0.045	3.9	8.6	3.3	1	21	585	605	585	606	0.94
4	16	0.025	2.2	9.3	3.6	2	23	661	682	660	682	0.95
5	16	8.8	7.6e+02	1.3	2.7	1	23	694	718	694	718	0.84
6	16	7e-05	0.006	17.4	0.7	2	23	725	748	724	748	0.97
7	16	0.055	4.8	8.3	0.2	1	23	754	776	754	776	0.93
8	16	0.0017	0.15	13.0	3.3	1	23	782	804	782	804	0.98
9	16	0.084	7.3	7.7	0.1	2	20	815	833	814	835	0.91
10	16	0.11	9.6	7.3	0.2	1	23	910	932	910	932	0.96
11	16	2.1	1.8e+02	3.3	6.3	1	23	939	961	939	961	0.95
12	16	0.0025	0.22	12.5	1.6	1	23	994	1017	994	1017	0.94
13	16	0.0032	0.27	12.2	0.7	1	23	1024	1047	1024	1047	0.97
14	16	0.0045	0.39	11.7	0.3	2	23	1069	1091	1068	1091	0.95
15	16	0.081	7	7.7	1.5	3	23	1109	1130	1107	1130	0.94
16	16	0.00011	0.0096	16.8	0.3	1	23	1157	1180	1157	1180	0.97

Sequence Information

Coding Sequence: ATGGCAGATCCGCCACCCCTGGTCCTGTGCATGGATAATATTAATGGTGATGAAGTAACTTTAAAAATTGATCCACATGATGACTTTCGGCTATTTTTTGACAAAGCCAAATCACAATTAGGTTTTGATATTGATTTAAATTCAATCACCGGCAATCAACCAGTATCTCTAGATGATAATATATATCAGTTCTTTCTTAATAATCAGCAAAATGTAAGTAGACACATTTCTGACAGTTATATTCAATCAGGATATAGTGATATAGAAAAAGAAAACGACGATTTAGTATACGTTCTAGATGACGGTACTCAAATAAACGCAACTCAAATTCAATTCGACAACGAAGACCCTTTAATTGATTTAACTGCTGAAAAAATCCCTTTCATCAAGTACACAGATGATCCAGTCGAAGAAATTGATTTTGATGACAATATCAGTATCAAAGACTTTCACATCGATAGCCCAGTATCGCGTTGGTCTAGCAGAAATTCCAGCCCGACAAGAGCCAAAAGCTTTATTAATAGCCTACCTTTTAAGTCTATATGCAATAACACATCTAATTATGAATTACAATTTAGAAAATATTTAGAATCCAATACTAAAACTTATGCAGTATTAAACTCAGTTAATGGAGCCGCATCACCGACAACGATTATTAAAGACAACTACAAAAAATATGAAGATAATCAAAAAGATGTTTTTACAAGAGAGGATATATTAAACATGTTTAAAGATTCGCCTGTGACGCATCTACCCTATGATAAATCAATTAATTATGATAAACGAAAGCATTCCAGAAAATCTGACCCATCCAGAATCGTGCATAAAAACTGGTATAAATCCAATTTAGATGCAGGCCCAAATCAGGATTGTTGTATCTGTGGAAAGATAATCCGGAATAATTATGAGAAAATGTATTTATTCGATAATGAAGATCAAAGAATTCACAGATGTTCACCTCAAAAAAGAACATCGGTGCAGCTAAAAATTATCTGTGAACAGTGTCTAGAAGACCATTTCAAATTGTGTCTGGTTAAAAGTCCGAACGAATCTCTTAATAGCGACGAATATTTGGTTATAAAAAATAACCAACAGTACATTTTTCAAAACATAACCGACATTGATTTGAAAAAGAAATTCTCGGATCAAAACAAAGACAAACCACTAAGGACAGATTTAAATGGCGGAAAGGAAAGTTCTAGTGACGTAGAGATTATAGAACCGGAAACAGAACTCGATAAAGCGATAGATAATGTAGATGAGGCAGATGAAGAAGTTAAAAAATTCTTGGGAAAATATCAAACTAAGCATTTAGCGGAATTAAAGTGCCGCTTTTGTGACAAAAATTTTGTGGATTTACCAGAAGTGATGGATCACTGTGAAGAGCATAAACATGATTTAGACGAGGAAGCCGTATTTCCTTGTCCATTGTGTGATTATGGTTACGCGAACTTAAAGTGGTTAAAGGGACATGTAAAGACAGCGCACGAACCACCTAAAGAAAGCAAAGATGCACAAAATGAGGTGGGACAAGATGAAAACGACGAAAACAAGTCGGGTATAGAAGGAAACATGGCCCCAATGCAATTAGAGACAATAGTAAAACAAGAGACCTTAGATAGTGATGATGAAGACATATGGATCGTTCACACTGGTGAAGACGTTGATGAACAGTTGCAGAGTCTGTTGAAATTTAATGAAGTTAAGAATGAAAAAGTTCAGCTATCACAGAAGGTCAATGAGTTGATTAAGCATAAGTGTTTTAATTGTAGCCGTATATTCCCAAACGCAGAAACCCTAAACACTCATAAATGTAGGAAGAGAGGGAGAAAGAGAAAATCGCCGACTGATACTGTTCTTTGCGTGCCTTCTAAAGAGGACTTTTTTAAACGGGCGCAAGGAAGGCCGAAACAAACAAATGATGATAGTTTATTGAAAATCCGTAAAAAACGAAGTCGGTCAGGTAGTCCGCAAATTGTCACTTGTCACAACTGTAATGAGTCCTTTTCATCAAAAGTCAGGCTCAAATTTCATATGCAATTCCACGAAAAAAGCGCTCTTCAAACCGAAGATGGTATGTACAAATGTAACGAATGTAAGAATACGACGTTTTTAACAGAGACAGAATTATTTGACCATATACATTTTCAACATAGTAAACAGAAAAGGTGGCAGTGCCCTGTTAAAGACTGTGGGAAGACCTTCTTTTTGAGAGCGACATTAACAAAACACAGTCGCACGCACACAGACACACGCCGATACGTATGTGTGACATGTGGAAAGCGATTCCTTGATAAGCAGACATTAGATGAGCACGGAGTCACACATTTACAGATAAAACCATTCCAATGCCACATATGTCTGAAACAGTTGACTCGAAGATCTCGCTTACGTATGCATTTACGAGCGCATGAGGAGGAGTTATGCCCAAAACTCGTATTGGTCTGTGGCATTTGTTCTCGTGCTTTTAGGGACCATACAGATGCGCAGGAGCACTTAACAAAATCAAGTGAATGTATTGAGACATTTGCCAACGACATAAAGCGGGATGAACCCAGCGAGCGACTCTCTCCCACAAGTGGACTTGTGACGCAGGCTGTCAAAACTGAATCCACTCTTAGCAAGCCAATACCAAGAGAAGTGAGTCAAGAAGAGAGTCAGCCCCTGCTCAAAGAGATGGATGAGTCGAGCAACGCCATCATACGAGTTGTCAGAATTGAAAAGGCTTTTCGGTGTGAATATTGTGAAGACGTGTTCTATTTGGAAGGCGCTCTAAACTCGCACAGAATCCAGCACAAAGGTGTTAAAAATCCGTTCGTTTGTCACGTCTGCAAAGTCAGCTTCGCTACATATTCCAGGTGTACAACCCATAAGACAACACATGGGTTTTACAAAAGGAATTTAACTGATGGTAAAAAAGAGGAAAGCGCAAGCAGTGCTGGGATTTTGGGATATGGTGGATTTCCTGTTGTCAAACACTTTTTGTGTGAGGACTGTGGTCGCTCCTATCTGCACTGGACGTATTTACAAGTACATCGCCGCTTGAAGCATGCCAACGAAAACTTTTTATTTAAGTGTAACCAATGTGAATTGACATTTCCTAACAGCTGGAGCGTTGCATATCATAGAAAGAAAATTCACGGAAAAACCGCACATGAAGATGGCGGTACCACGAAAATAGCCAGACAAGATTATTATAGAATACCATGCCGAGATTGTGACCAAGTTTTGCCAAATAAATTTGAACTTTACAAACATAGACAGAAGGAACATTGTGATGAGGCGTTGGATGATTATGAAGAAATGATCAAGGATTCCACAATATGTCCAAAATGTGGACACAACTTGCACAATGTCAATGCGCTCCAAAAACATTTAAAAGAAGTACACGGTATACAAAATGATTCGGTTCGCAACGAACCCATTCGTTCTCTGAACGTTCTTAGACGCCCGCCAATGCGTCGTACTTTTACCTGTCCGCGGTGCCCTGGTAGGTTCCGTCAAGTGTCAGAATTACAAGCGCACTTACGACTCAAGCATCCCTCTTTTACTATTGTTATTGAGTTAGAAAACACAAGCCTAACACGCGAAGATGTACTGAAGCAATTATCTCTACATAACATACCACGAGAAAGCGTCTCCGAAACGTACTACATATCCGTTCCTATGGGTATCCCACACATAATTCCAAATTCACCGCAGGCACTGGAAATGCTAAGCAATTCGTTTCCAAGGACTGATGTCATTCTTGATAAACCTAATGAAGTACTTCATAATTTATTTAGGTCTAGCCAACTAAGGTTCAGAAGCTGCTCACAGGATGGTGCTTTTGGAAGTAACTACGTCAGTTAA
Protein Sequence: MADPPPLVLCMDNINGDEVTLKIDPHDDFRLFFDKAKSQLGFDIDLNSITGNQPVSLDDNIYQFFLNNQQNVSRHISDSYIQSGYSDIEKENDDLVYVLDDGTQINATQIQFDNEDPLIDLTAEKIPFIKYTDDPVEEIDFDDNISIKDFHIDSPVSRWSSRNSSPTRAKSFINSLPFKSICNNTSNYELQFRKYLESNTKTYAVLNSVNGAASPTTIIKDNYKKYEDNQKDVFTREDILNMFKDSPVTHLPYDKSINYDKRKHSRKSDPSRIVHKNWYKSNLDAGPNQDCCICGKIIRNNYEKMYLFDNEDQRIHRCSPQKRTSVQLKIICEQCLEDHFKLCLVKSPNESLNSDEYLVIKNNQQYIFQNITDIDLKKKFSDQNKDKPLRTDLNGGKESSSDVEIIEPETELDKAIDNVDEADEEVKKFLGKYQTKHLAELKCRFCDKNFVDLPEVMDHCEEHKHDLDEEAVFPCPLCDYGYANLKWLKGHVKTAHEPPKESKDAQNEVGQDENDENKSGIEGNMAPMQLETIVKQETLDSDDEDIWIVHTGEDVDEQLQSLLKFNEVKNEKVQLSQKVNELIKHKCFNCSRIFPNAETLNTHKCRKRGRKRKSPTDTVLCVPSKEDFFKRAQGRPKQTNDDSLLKIRKKRSRSGSPQIVTCHNCNESFSSKVRLKFHMQFHEKSALQTEDGMYKCNECKNTTFLTETELFDHIHFQHSKQKRWQCPVKDCGKTFFLRATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHLRAHEEELCPKLVLVCGICSRAFRDHTDAQEHLTKSSECIETFANDIKRDEPSERLSPTSGLVTQAVKTESTLSKPIPREVSQEESQPLLKEMDESSNAIIRVVRIEKAFRCEYCEDVFYLEGALNSHRIQHKGVKNPFVCHVCKVSFATYSRCTTHKTTHGFYKRNLTDGKKEESASSAGILGYGGFPVVKHFLCEDCGRSYLHWTYLQVHRRLKHANENFLFKCNQCELTFPNSWSVAYHRKKIHGKTAHEDGGTTKIARQDYYRIPCRDCDQVLPNKFELYKHRQKEHCDEALDDYEEMIKDSTICPKCGHNLHNVNALQKHLKEVHGIQNDSVRNEPIRSLNVLRRPPMRRTFTCPRCPGRFRQVSELQAHLRLKHPSFTIVIELENTSLTREDVLKQLSLHNIPRESVSETYYISVPMGIPHIIPNSPQALEMLSNSFPRTDVILDKPNEVLHNLFRSSQLRFRSCSQDGAFGSNYVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00879165;
90% Identity: iTF_01206872;
80% Identity: -