Lari008053.1
Basic Information
- Insect
- Leptophobia aripa
- Gene Symbol
- -
- Assembly
- GCA_951799465.1
- Location
- OX637270.1:7323763-7338562[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3.4 2.1e+02 2.7 1.4 2 19 438 455 437 459 0.89 2 15 0.063 3.9 8.2 0.3 1 23 469 492 469 492 0.96 3 15 0.014 0.9 10.2 2.3 1 21 581 601 581 602 0.94 4 15 0.013 0.82 10.3 3.1 2 23 657 678 656 678 0.95 5 15 7.3e-05 0.0046 17.4 0.7 2 23 721 744 720 744 0.97 6 15 0.058 3.6 8.3 0.2 1 23 750 772 750 772 0.93 7 15 0.01 0.65 10.7 3.4 1 23 778 800 778 800 0.98 8 15 0.075 4.7 8.0 0.1 2 21 811 830 810 831 0.91 9 15 0.0032 0.2 12.3 0.2 1 23 906 928 906 928 0.97 10 15 2.2 1.4e+02 3.3 6.3 1 23 935 957 935 957 0.95 11 15 0.0027 0.17 12.5 1.6 1 23 990 1013 990 1013 0.94 12 15 0.0061 0.38 11.4 0.3 1 23 1020 1043 1020 1043 0.97 13 15 0.014 0.86 10.3 0.5 2 23 1065 1087 1064 1087 0.95 14 15 0.1 6.5 7.5 1.2 3 23 1105 1126 1103 1126 0.94 15 15 0.00034 0.021 15.3 1.2 3 23 1158 1179 1156 1179 0.93
Sequence Information
- Coding Sequence
- ATGGCAGAGCCACCACCTATGGTGCTGTGTATGGATAATGTAAATGGTGATGAAGTGACTTTAAAAATTGAACCACATGATGACTTTCggcttttttttgataaggccaaaTCACAATTAGGTtttgatattgatttaaattcaattaccGGCAATCAACCAGTATCCCTAgatgataatatttatcaattctTTCTCAATAATCCGCATAGTATTAGTAGACAGATTCCTGATACTTTCCAATCAGAATATAGCCATATAGGAAAAGACAACGACGATTTAGTATATGTTCTAGATGATGGCACTCAAATAAACGCGACTCAAATTCAATTCGACAATGAAGATCCTTTAATTGATTTGACTGCTGAAAAGATACCTTTTGTCAAATACACAGATGATGCAGTTGATGAAAATGATTTCAATGATAATATTAGTATCATAGATTTTCAAATTGATAGCCCTGTATCTCGCTGGTCTAGTAGAAACTGTAGTCCTACCAGGGCTAAAAGCTTTATTAACAGTCTACCTTTCACACCCATATACAATAACTCATCTAATTATGAAGTGCAgcttagaaaatatttcaattcaaatgCTAACCCAGTTAGTGGAGTGACATCGCCaacaacaattattaaagaaaactaCAAAAATTATGATGATAATCTGCCGAATCAAAAAGAAGTTTTTACCAGAGAGgatattttaaacatgtttaaaGATACACCTGTGACCCATCTACCTTACGATAAATCGATTAATTATGACAAACGTAAACATTCAAGAAAATCTGATCCATCTAGAATAGTGCATAAGAATtggtataaaacaaattttgattCTGGTCCGAACCAGGATTGTTGTATCTGCGGAAAGATAATAAGGAACAATTATGAGAAAATGTATCTATTTGATAACGAAGATCAAAGGATTCATAGGTGTTCACCGCAAAAGAGGACTTCAGTTAAGTTAAAAATCATCTGTGAACAATGTCTGGAGGACCATTTCAAATTGTGCCTAGTCAAAAGCCCCAACGAATCCCTCAATAGCGACGAATACTTGGTCATAAAGAACAATCAACAGTTCATTTTCCAGAACATAACCGACATTGAtttgaaaaagaaatttaCCAATCAAAACATAGAGGCGTCACCAAATCCAAAACAAAACGCTATCAAGGATAGTTCTAGCGATGTAGAGATTATAGAACCGGAGACAGATATAGACAAAGCCATAGACAATGTGGATGAAGAAGACGAGGAAGTGAAAGAGTTTTTGGGCAAATACCAAACTAAGCATTTAGCGGAATTGAAGTGCCGCTTTTGTGACAAATTGTTTGTGGATTTACAAGAAGTGACGGATCACTGTGAAGAGCACAAGCATGATTTAGTCGAGGAAGTGGTTTTTCCCTGTCCCTTATGCGATTATGGATACGCGAATATAAAGTGGTTGAAGTGTCATGTGAAGACAGCGCACGAACCACGCGACGAAGGGCAAGATGGGAAAAGTGAGGtggGAATAGATGAGAAATAcgataaaattgaaaatgtttttgaGGAAAGCAAGGTACCAATGCAATTAGATACCGTGGTGAAGCAAGAGGCGTTAGATAGCGATGATGAAGACATTTGGATAGTTCACACCGGTGATGTTGTTGATGAACAGTTGCAGAGCCTATTGAAGTTTAGTGAAGCTAAGAATGAAAATCAACAATCACGGGAGGTCAATGAGTTGATTaagtttaagtgttttaattgtaGtcGCATTTTTCCGAATGCGGAGACTCTCAACACACATAAATGTAGGAAGCGAGGGAGAAAGAGAAAATCTCCAACGGACCCTGTGCTTTGTGTACCCTCTAAGGAAGACTTTTTTAAAAGAGCGCAAGGTAGACCGAAAAAAACGAACGACGACAGTCTATTGAAAATCCGTAAGAAGCAAAAGCGGACGGGAAGTCCGCAAATCGTGACGTGTCACAACTGCGATGAATCGTTCTCATCCAAAGTTAGACTCAAGTTTCATATGCAATTCCATGAGAAAAGTGCTCTAAAAACTGATGATGATCGGTACAAATGCAACGAATGTCAGGATACAATATTCTTGACGGAAACCGAGTTGTTTGACCATATACATTTCCAACACAGCAAACAGAAAAGGTGGCAGTGCCCGGTCAAAGATTGCGGAAAGACGTTCTTTTTGAGAGCGACGCTGACGAAACACAGTCGCACGCACACAGACACGCGCCGTTACGTATGTGTGACGTGTGGGAAACGGTTCCTCGACAAGCAGACTTTGGATGAGCACGGTGTTACGCATTTGCAGATAAAACCATTCCAGTGCCACATATGTATGAAGCAGTTGACGCGCAGGTCTCGCCTGCGCATGCACTTGCGGGCGCACGAAGAGGAGTTGTGCCCGAAACTTGTGCTAGTCTGTGGCATTTGTTCGCGCGCTTTTAGGGATCATACTGATGCACAGGAACATTTGATAAGATCAAGTGAATGCATCGAAACGTTTGCCAACGAGATAAAGGAAGACGAGCCCACCGAAAGACTGTCTCCAACGAGTGGAATTGTTACTCAGGCTTGCAGAGAAGAATCCACTCTCAGCCAGCCAATACCAAAGGAAGTGAGTGAAGAAGAGAGTCGGCCGCTGATGAAAGAGCTGGATGATGCAGCGAAAGCTATCATGCGTGTGGTCAGAATTGAAAAGGCTTTTCGGTGTGAATATTGCGAGgaGGTGTTTTATTTGGAGGGCGCTTTAAACTCGCACAGAATTCAACACAAGGGTATTAAAAATCCATTCGTTTGTCATGTCTGCAAAGTCAGCTTCGCTACATATTCCAGGTGCACGACGCATAAAACAACACACGGATTCTATAAAAGGAATTTAACCGACGGCAAAAAGGAGGAGAACGCGAGCAGTGCGGGTATATTGGGCTACGGTGGGTTTCCCGTTGTGAAACACTTTTTATGCGAGGACTGTGGACGTTCGTACTTGCACTGGACGTACCTGCAAGTCCATCGTCGCTTGAAGCACACGAATGAAAACTTTATCTTCAAATGTAACCAGTGCGAGTTGGCATTTCCTAACAGCTGGAGCGTTGCGTATCATAGAAAGAAAATACATGGAAAAACTGCGCACGAAGGTGGTGGCACCACGAAAATAGCCAGACAGGATTATTATAGaattccATGCCGGGACTGTGACCAGTTTTTGCCAAATAAGTTTGAGCTTTATAAACATAGGCAGAAGGAACATTGTGATGAGGCGGTGGATGATTTTCAAGaattaattaaagatacaACAATCTGTCCAAAGTGTGGACACAATTTGCACAACGTTAACGCACTCCAAAGACACGTGAAaGAAGTACACGGCATACAAAATGACGAACTCACTCAAAAGGATCGCAACGGACCGATGCGTTCACTTAACGTATTGAGAcgCCCGCCAATCCGTCCTATAAACTGTCCACACTGCTCTGAAAGATTCCGTCAAGTGAGCGAGTTACAAGCGCACAAACAACTCAAACATCCCCCCTTCACTATTGTTATTGAGttAGAAAATTCAAACTTAACACGCGACGATGTTCTGCGCCATTTGTCTCTACATAATATACCCAGAGAAAGTGTCTCCCAAACATATTTCATCACTGTTCCTAAGggTGTCCCGCACATTGTTCCTAATTCGCCACAGACCTTAGAAATGCTAAGCAAATCCTTTCCCAGGACTGATGTTATTCTAGATAAGCCAgGTCCAGCCAACTAA
- Protein Sequence
- MAEPPPMVLCMDNVNGDEVTLKIEPHDDFRLFFDKAKSQLGFDIDLNSITGNQPVSLDDNIYQFFLNNPHSISRQIPDTFQSEYSHIGKDNDDLVYVLDDGTQINATQIQFDNEDPLIDLTAEKIPFVKYTDDAVDENDFNDNISIIDFQIDSPVSRWSSRNCSPTRAKSFINSLPFTPIYNNSSNYEVQLRKYFNSNANPVSGVTSPTTIIKENYKNYDDNLPNQKEVFTREDILNMFKDTPVTHLPYDKSINYDKRKHSRKSDPSRIVHKNWYKTNFDSGPNQDCCICGKIIRNNYEKMYLFDNEDQRIHRCSPQKRTSVKLKIICEQCLEDHFKLCLVKSPNESLNSDEYLVIKNNQQFIFQNITDIDLKKKFTNQNIEASPNPKQNAIKDSSSDVEIIEPETDIDKAIDNVDEEDEEVKEFLGKYQTKHLAELKCRFCDKLFVDLQEVTDHCEEHKHDLVEEVVFPCPLCDYGYANIKWLKCHVKTAHEPRDEGQDGKSEVGIDEKYDKIENVFEESKVPMQLDTVVKQEALDSDDEDIWIVHTGDVVDEQLQSLLKFSEAKNENQQSREVNELIKFKCFNCSRIFPNAETLNTHKCRKRGRKRKSPTDPVLCVPSKEDFFKRAQGRPKKTNDDSLLKIRKKQKRTGSPQIVTCHNCDESFSSKVRLKFHMQFHEKSALKTDDDRYKCNECQDTIFLTETELFDHIHFQHSKQKRWQCPVKDCGKTFFLRATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPFQCHICMKQLTRRSRLRMHLRAHEEELCPKLVLVCGICSRAFRDHTDAQEHLIRSSECIETFANEIKEDEPTERLSPTSGIVTQACREESTLSQPIPKEVSEEESRPLMKELDDAAKAIMRVVRIEKAFRCEYCEEVFYLEGALNSHRIQHKGIKNPFVCHVCKVSFATYSRCTTHKTTHGFYKRNLTDGKKEENASSAGILGYGGFPVVKHFLCEDCGRSYLHWTYLQVHRRLKHTNENFIFKCNQCELAFPNSWSVAYHRKKIHGKTAHEGGGTTKIARQDYYRIPCRDCDQFLPNKFELYKHRQKEHCDEAVDDFQELIKDTTICPKCGHNLHNVNALQRHVKEVHGIQNDELTQKDRNGPMRSLNVLRRPPIRPINCPHCSERFRQVSELQAHKQLKHPPFTIVIELENSNLTRDDVLRHLSLHNIPRESVSQTYFITVPKGVPHIVPNSPQTLEMLSKSFPRTDVILDKPGPAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01206872; iTF_01202767; iTF_01205214; iTF_01206018; iTF_01204376; iTF_01203555;
- 90% Identity
- -
- 80% Identity
- -