Basic Information

Insect: Pieris napi
Gene Symbol: -
Assembly: GCA_905475465.1
Location: FR997702.1:12671075-12675081[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0012 0.1 13.5 2.0 1 23 295 317 295 317 0.97

2 13 0.03 2.6 9.1 3.0 3 23 328 348 326 348 0.93

3 13 2.3e-05 0.002 18.9 0.5 2 23 354 375 353 375 0.96

4 13 0.00035 0.03 15.2 0.2 2 23 380 402 379 402 0.95

5 13 5.3e-05 0.0046 17.8 1.8 1 23 406 429 406 429 0.93

6 13 0.0096 0.84 10.7 0.4 3 23 434 454 433 454 0.95

7 13 0.012 1 10.4 0.4 5 23 521 539 518 539 0.92

8 13 0.066 5.7 8.0 0.1 2 23 559 581 558 581 0.94

9 13 2.7e-06 0.00023 21.8 3.1 1 23 587 609 587 609 0.98

10 13 0.001 0.089 13.7 1.3 1 23 614 636 614 636 0.97

11 13 0.0013 0.11 13.4 4.6 2 23 643 665 642 665 0.95

12 13 2 1.7e+02 3.4 0.3 3 19 673 689 671 690 0.88

13 13 0.014 1.2 10.2 3.2 3 19 703 719 701 724 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0012	0.1	13.5	2.0	1	23	295	317	295	317	0.97
2	13	0.03	2.6	9.1	3.0	3	23	328	348	326	348	0.93
3	13	2.3e-05	0.002	18.9	0.5	2	23	354	375	353	375	0.96
4	13	0.00035	0.03	15.2	0.2	2	23	380	402	379	402	0.95
5	13	5.3e-05	0.0046	17.8	1.8	1	23	406	429	406	429	0.93
6	13	0.0096	0.84	10.7	0.4	3	23	434	454	433	454	0.95
7	13	0.012	1	10.4	0.4	5	23	521	539	518	539	0.92
8	13	0.066	5.7	8.0	0.1	2	23	559	581	558	581	0.94
9	13	2.7e-06	0.00023	21.8	3.1	1	23	587	609	587	609	0.98
10	13	0.001	0.089	13.7	1.3	1	23	614	636	614	636	0.97
11	13	0.0013	0.11	13.4	4.6	2	23	643	665	642	665	0.95
12	13	2	1.7e+02	3.4	0.3	3	19	673	689	671	690	0.88
13	13	0.014	1.2	10.2	3.2	3	19	703	719	701	724	0.93

Sequence Information

Coding Sequence: ATGGAAAGTGAAACAATTGAGATGGTCGTAGAACATCCATATCCAGTTCTGTACGTTCCAAAATGGTGTGTGACATTCGAACACGACTTTGGTCCCAATAAAAATTTATTTCTTGATGTCGACATTCTTTCCAATAACACAGATCAGCAACGGACAACTGTGTATAAGGGCTACATTGCCCTTAAAGTCATTGATACTAAAGCCCCGGCTAATCCAATCATTTTGCAAAATGACGCATTTTTAGAAGCTGATCTATCCTTTAATATTAATGATAGAGCATGGTTAAACCTTAGCCCATGTGAATACCAGTCTGAAGGTGTCGAATGTGGCGAAGGTTGTTCACTGTACCAAGAACCACAGTTTTCTTATATAACTGCTGAGCATCTACAAATTCCACCCATAACCTACCAAGAAGAAGAAATTGAAATCTCTGAAGCTGCAGAGCCTGTATTTCTGCACAAGAAATTTAGGAAATCCACAAGTCGTGAGCGAGAAGACAGCCAACAAAATGACAATTTTAATAGTCAAAGCTCTGAACAAATTTTTGAAAACTCTGGTGAAAACCAAAACACTTATTATACTTCAGAAGAATTAAATTATGAAAATGAAATTCATGGAAATAATAGTGGAATAGATAAATGCAGAGAGGCAGACAATGCTTGTTCTCTTACAGAAAGTATTGCAATTGTGGAAAACTGTGCATTAAAGCAATTAATGTCTGACTTTGCATCGCCAAAACAAAATAAAGTTATTGTGTTTGCTGGAGACAATTCTAAGAATGGCCAGACAATTTACCAAATTAAGGATTCTTCTCTGCAATGTGGTGGGAAAAAAATAATAGAAGATTCTGTTAAATTTACTAATGTTGGTAAAAAGAAGATATATCAATGCCAAAATTGTAAGAGGACATTTGATAAGTTAAAAGCATTTCGACAGCATGCCAGTATCCACAAGAAACAATCCCGGGTTAATTTGAAACACTGTGAAACTTGCAAGAGAACTTTCAAATCTTTGGAGAAGTATAAGGAACATGCTTTAGGGCACAACGACCCCGACTTGGAATGTCCAAAATGCTATAAAGTCCTTCGCACTAAATACACGCTCCGCGTGCATATGTCGATACACAATAGGCAACTGCCCTGCCCAAAGTGTACTCTAACATACAACGACCAAGCGTCGCTTGATCGACACATTTCACGAATGCACAGTCCAAAATTTTCCTGCTCACACTGCGGACAAGGTTTTAAAACCTTGGACGCACTAGAAAAGCATAAAGTAAAGACCCACAGCATGGTCTTCTGCAACATCTGCAACGCGGAATTCAACACAGAGAAAGAATATTTGAAACATCTAGACGAGCACATAATAGACAACTTCAATTCCGACGACGGCCTTTCTATAAAGAGTGTGGATAACATCTTGAACGATGTCAATTTAGACTTGTTCGAAGATAGCACTATTCGTGGGAGTGATCCCGTCATACAGAAGATTGCTGACGATCGGTTCTTTTCTATGAATCCACAGCTATCTCATAAGAAGCGAATGTCCCGGATTTGCATTGTGTGCAAGAAAAAGTTCGACAGGATAAGCGACATGAAGCGCCACCTCATAGAACACGTCATCAAGAGGAGCCTCGCGAAGAACCCGATCAACGAAGACGGGACCCTCAGCATAGTGTGTGACATCTGCCGCGTCGCCACTTTCTCCCGAGTCGACACCTACAAGGCCCACCTGCGGGAGCACGCCAAGCTGACGATCTACAAGTGCCTCCTGTGCGACAAGTCCTTCAGCGACTCGAGCAACTTCTCCAAACACAAGAAGCTCCACGGCCAATCTCGCTTCGAGTGCGACCTGTGTAAGAGGAAGTTCAATTCCAAAAAAACCATCTCCATACATATGGAGTTGCATTTCAAAACGGCCCCTTTGTCCTGCTCGCGCTGCAACAAAAAGTTCCATTTCCCCTCGACGCTCAATAAGCATCTTAAAAACCAGCACAAGCGAAATTATCACGTGAACTGCAGGTTCTGTGAGGCGACATTCAAGTCCTGGAAGGACAAGTGGGATCACGAATGGCATGCCCACAACGCCAGGAACACCATCTTGGACTGTTTGGTGTGCGATAAGAAGTTCAGGAAGTACACCGAGTTGAAGCGACACTGCAGCGATACGCATCACGTGATGATCCCCTTGGCGAAAAATTTGTAA
Protein Sequence: MESETIEMVVEHPYPVLYVPKWCVTFEHDFGPNKNLFLDVDILSNNTDQQRTTVYKGYIALKVIDTKAPANPIILQNDAFLEADLSFNINDRAWLNLSPCEYQSEGVECGEGCSLYQEPQFSYITAEHLQIPPITYQEEEIEISEAAEPVFLHKKFRKSTSREREDSQQNDNFNSQSSEQIFENSGENQNTYYTSEELNYENEIHGNNSGIDKCREADNACSLTESIAIVENCALKQLMSDFASPKQNKVIVFAGDNSKNGQTIYQIKDSSLQCGGKKIIEDSVKFTNVGKKKIYQCQNCKRTFDKLKAFRQHASIHKKQSRVNLKHCETCKRTFKSLEKYKEHALGHNDPDLECPKCYKVLRTKYTLRVHMSIHNRQLPCPKCTLTYNDQASLDRHISRMHSPKFSCSHCGQGFKTLDALEKHKVKTHSMVFCNICNAEFNTEKEYLKHLDEHIIDNFNSDDGLSIKSVDNILNDVNLDLFEDSTIRGSDPVIQKIADDRFFSMNPQLSHKKRMSRICIVCKKKFDRISDMKRHLIEHVIKRSLAKNPINEDGTLSIVCDICRVATFSRVDTYKAHLREHAKLTIYKCLLCDKSFSDSSNFSKHKKLHGQSRFECDLCKRKFNSKKTISIHMELHFKTAPLSCSRCNKKFHFPSTLNKHLKNQHKRNYHVNCRFCEATFKSWKDKWDHEWHAHNARNTILDCLVCDKKFRKYTELKRHCSDTHHVMIPLAKNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01205159;
90% Identity: iTF_01202688;
80% Identity: -