Pbra012961.1
Basic Information
- Insect
- Pieris brassicae
- Gene Symbol
- -
- Assembly
- GCA_905147105.1
- Location
- LR989932.1:23021562-23026360[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.001 0.087 13.6 1.8 1 23 305 327 305 327 0.98 2 13 0.014 1.2 10.0 4.0 3 23 338 358 336 358 0.94 3 13 2.2e-05 0.0018 18.9 0.5 2 23 364 385 363 385 0.96 4 13 0.00075 0.062 14.1 0.1 2 23 390 412 389 412 0.95 5 13 6.7e-05 0.0056 17.4 1.7 1 23 416 439 416 439 0.93 6 13 0.0092 0.76 10.6 0.4 3 23 444 464 443 464 0.95 7 13 0.011 0.91 10.4 0.4 5 23 531 549 528 549 0.92 8 13 0.063 5.2 8.0 0.1 2 23 569 591 568 591 0.94 9 13 2.5e-06 0.00021 21.8 3.1 1 23 597 619 597 619 0.98 10 13 0.00069 0.057 14.2 1.2 1 23 624 646 624 646 0.97 11 13 0.0012 0.1 13.4 4.6 2 23 653 675 652 675 0.95 12 13 3.3 2.7e+02 2.6 0.4 3 19 683 699 681 700 0.88 13 13 0.011 0.95 10.3 3.1 3 19 713 729 711 734 0.92
Sequence Information
- Coding Sequence
- ATGGATTATTTTTTTTCAGTGAAAATGGATAGTGAAACAATTGAGATGGTCGTAGAACATCCATATCCAGTTCTGTACGTTCCAAAATGGTGTGTAACATTCGAGCACGACTTTGGGCCCAATAAAAATTTATTTCTTGATGTCGACATTCTTTCCAACAACACAGATCAACAACGGACAACTGTGTATAAGGGCTACATCGCCCTCAAAGTCATTGATACTAAAGCTCCCGCTAATCCAATTATTTTGCAAAATGACGCATTTTTAGAAGCTGATCTATCCTTTAATATTAATGATGATAGAACATGGTTGAACCTTAGCCCATATGAATACCAGTCTGAAGGTGTGGAATGTGGTGAAGGTTGTTCACTGTACCAAGAACCACAGTTTTCTTATATAACTGCTGAGCATCTACAACTTCCACCCACAACCTACCAAGAAGAAGAAAATGAAATCTCTGAGGTTGCAGAGCCTGTATTTCTGCACAAAAAATTTAGGAAATCCACAAGTCGTGAACGAGAAGACAGCCAACAAAATGATAATTTTAACAGTCAAAGCTCTGAACAAATTTTTAATGAAAATTCTGCTGAAAACCAAAACACTTACTATACTTCAGGGGAATTAAATTATGAAAATGAAATTAATGAAAATAATAGTGGGATAGATAAATGCAGAGACTTAGATAATGCTTGTTCCCTCACAGAAAGTATTGCAATTGTGGAAAATTGTGCATTAAAGCAATTAATGTCCGACTTTGCATCGCCTAAACAAAATAAAGTTATTGTGTTTGCTGGAGACAATTCTCAGAATGGTCAGACAATTTACCAAATTAAGGATTCTTCTCTGCAATGTGGTGGCAAAAAAATAATAGAAGATTCTGTAAAATTTACTAATGTTGGTAAAAAGAAGATATATCAATGTCAAAATTGCAAGCAGACATTTGATAAGTTAAAAGCATTTCGACAGCATGCCAATATCCACAAGAAACGATCCCGGGTTAATTTGAAACACTGCAATACATGCAAGAGAACTTTCAAGTCACTGGAGAAGTTTAAGGAACATGTTTTAGGTCACAATGACCCCGATTTGGAATGTCCAAAATGCTATAAAGTGCTTCGAACTAAATACACTCTCCGCGTGCATATGTCGATACACAATAGGCAACTGCCCTGCCCAAAGTGTACTCTAACGTACAACGACCAACCGTCGCTGGATCGACACATTTCACGAATACACAGCCCAAAATTTTCTTGTTCACACTGCGGCCAAGGTTTTAAAAGCTTGGACGCACTAGAAAAGCATAAAGTAAAGACTCACAGCGTTGTCTTCTGCAACATCTGCAACGCGGAATTTAACACCGAGAAAGAATATTTGAAACACCTAGACGAGCACATAATAGACAATTTAAATTCGGACGACGACCTTTCAATAAAGAGTGTGGATAACATCCTCAACGATGTCAATTTGGACTTGTTCGAAGATAGCACTGTTCGTGGGAGTGATCCCATCATACAGAAGATTGCTGATGATCGGTTCTTTTCTATGAATCCACAGCTATCTCATAAGAAGCGAATGTCCCGGATTTGCATTGTGTGCAAGAAGAAGTTCGACAGGATAAGTGACATGAAGCGCCATCTCATAGAACACGTCATCAAGAGGAGCCTCGCGAAAAACCCGATCAACGACGACGGGACCCTCAGCATCGTGTGTGACATCTGCCGCGTCGCCACTTTCTCCAGAGTCGACACCTACAAGGCCCACCTGCGCGAGCACGCTAAGCTGACGATCTACAAGTGCCTCTTGTGCGACAAGTCCTTCAGCGACTCGAGCAACTTCTCGAAACACAAGAAGCTCCACGGTCAATCTCGCTACGAATGCGACCTGTGTAAGAGGAAGTTCAATTCCAAGAAAACCATCTCCATACATATGGAGTTGCATTTCAAAACGCCTCCTCTGTCTTGCTCGCGCTGCAACAAAAAGTTCCACTTCCCTTCGACGCTCAATAAGCACCTTAAAAACCAGCACAAGCGAAATTATCACGTGAACTGCAGGTTCTGTGCGACGACTTTCAAGTCCTGGAAGGACAAGTGGGATCACGAATGGCACGCCCACAACGCCAGGAACACCATCTTAGACTGTTTGGTCTGCGATAAGAAGTTCAGGAAGTACACTGAGCTGAAGCGACACTGCAGCGAGTCGCATCACGTGATGATTCCCTTGGCGAAGAATTTGTAA
- Protein Sequence
- MDYFFSVKMDSETIEMVVEHPYPVLYVPKWCVTFEHDFGPNKNLFLDVDILSNNTDQQRTTVYKGYIALKVIDTKAPANPIILQNDAFLEADLSFNINDDRTWLNLSPYEYQSEGVECGEGCSLYQEPQFSYITAEHLQLPPTTYQEEENEISEVAEPVFLHKKFRKSTSREREDSQQNDNFNSQSSEQIFNENSAENQNTYYTSGELNYENEINENNSGIDKCRDLDNACSLTESIAIVENCALKQLMSDFASPKQNKVIVFAGDNSQNGQTIYQIKDSSLQCGGKKIIEDSVKFTNVGKKKIYQCQNCKQTFDKLKAFRQHANIHKKRSRVNLKHCNTCKRTFKSLEKFKEHVLGHNDPDLECPKCYKVLRTKYTLRVHMSIHNRQLPCPKCTLTYNDQPSLDRHISRIHSPKFSCSHCGQGFKSLDALEKHKVKTHSVVFCNICNAEFNTEKEYLKHLDEHIIDNLNSDDDLSIKSVDNILNDVNLDLFEDSTVRGSDPIIQKIADDRFFSMNPQLSHKKRMSRICIVCKKKFDRISDMKRHLIEHVIKRSLAKNPINDDGTLSIVCDICRVATFSRVDTYKAHLREHAKLTIYKCLLCDKSFSDSSNFSKHKKLHGQSRYECDLCKRKFNSKKTISIHMELHFKTPPLSCSRCNKKFHFPSTLNKHLKNQHKRNYHVNCRFCATTFKSWKDKWDHEWHAHNARNTILDCLVCDKKFRKYTELKRHCSESHHVMIPLAKNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01205159;
- 90% Identity
- iTF_01205159; iTF_01205158; iTF_01206806; iTF_01205952; iTF_01203474;
- 80% Identity
- -