Pnap010551.1
Basic Information
- Insect
- Pieris napi
- Gene Symbol
- -
- Assembly
- GCA_905475465.1
- Location
- FR997712.1:3838708-3841681[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.062 5.3 8.1 0.5 1 23 53 76 53 76 0.95 2 20 9.2 8e+02 1.3 0.1 5 23 104 123 103 123 0.91 3 20 0.012 1.1 10.3 2.8 2 23 146 167 145 167 0.97 4 20 5.3e-05 0.0046 17.8 0.3 1 23 171 193 171 193 0.97 5 20 0.0076 0.66 11.0 4.9 1 23 198 221 198 221 0.97 6 20 0.022 1.9 9.5 1.1 2 23 228 250 227 250 0.95 7 20 6.9e-05 0.006 17.4 1.9 1 23 256 279 256 279 0.98 8 20 0.03 2.6 9.1 5.1 1 23 285 307 285 307 0.96 9 20 1.6e-05 0.0014 19.4 2.8 1 23 314 336 314 336 0.99 10 20 0.0063 0.54 11.2 5.8 1 23 342 365 342 365 0.96 11 20 0.0035 0.3 12.0 0.3 1 23 428 451 428 451 0.94 12 20 0.12 10 7.2 1.0 2 23 478 500 477 501 0.93 13 20 0.046 3.9 8.5 3.0 2 23 523 544 522 544 0.97 14 20 1.6e-06 0.00014 22.6 0.3 1 23 548 570 548 570 0.98 15 20 0.97 84 4.3 2.5 1 19 575 593 575 595 0.86 16 20 0.017 1.5 9.9 0.8 2 23 606 628 605 628 0.91 17 20 0.012 1 10.4 4.5 2 23 636 658 635 658 0.96 18 20 7.8e-05 0.0067 17.2 1.0 1 23 664 686 664 686 0.95 19 20 2.9e-06 0.00025 21.8 1.5 1 23 692 714 692 714 0.98 20 20 0.00062 0.053 14.4 1.7 1 20 720 739 720 739 0.95
Sequence Information
- Coding Sequence
- ATGGAATTAACAATTCAAGAAAGTGAACAAGGGAGTGTAAAACCCGTCGGATTAGCAGGTACCAGAAACCCAGAATTAAAAAAACATTTCGATAATTTAGAACTCATATTGATGTGGTCTAATGCGACTCCAATCAAGACTTATGGAGGTAAAGGCTATACGTGCTCCTACTGTCTGCAACAATTCCTTGTACCAGCTGATCTAAAGAAGCATACACAAGAAACACATAGCAAAATTGTTGGTCCAATAGTAAAAAAGTCAGACTTAAGAGGTTTTCATATGAAACTAGACATTACTGACTTGGAATGTGTCTGTACAAAAACACTTGATGATATAGAAGAACTTGTAGATCATTTGTGTGAAGAACACGATTTATATTTTCATACTGATATCAAAAATTACATTATACCCATTAAGTTTTACAACGATGAACTTCGATGCTATATATGTGTAAACAAATTTTGTTCGTTTAAAATGCTGATAAAACACATGAACGTCCATTTTAGAAATTTCGTTTGTAACGTTTGTGATGAGGGCTTTGTTTATAGTAAGCAGTTGAAGAATCATTCCGCAACACATTTGACTGGGTCCTTCAAATGTGATAGTTGTGACAAGTCCTTTGATACAAAGCAAAAGTGTCGGTATCATATAAGATCGGTGCATTCTATGAAAGCGAGAAATAAGTGCGTGTATTGCGGCGAGTTCTTTAGGGACTACCGTACCAAAATTTCACACCAGTACAAAGTGCATGGGGTAGCCTGTGTCTTCAAATGTACCGCCTGCGATAGAAGCTTTATTAGCCAGAGGGGCTATCAAACTCACATGCAAAGATATCACCTAATGGAAAGACGACATCCCTGCAAATATTGTGACATGAGATTTTACTCAACATCCGAATTAAAATGTCATCTAGCTAAACATAATATTGAGGTCCCTGTCTTCAAATGCGACATTTGTATGAAATCGTATAAGAGAAAAACGACGCTACGGAATCATTTGAGAATCCATTCTGATGATAGGCGGTACAGATGTGAGGTCTGTAGTAGAACCTTCGTCCATAAGTGTAGTTGGAGGAGCCATTTGACATCTAAACATGGAATTATACAACCTAAAGTATCTTATTGTCCGCGACGTAGCCACACAAATGATCTTATTGATGATCAGAGTGTCAAAAAACAAAGAGAAAAGAAAGGTGTAGAATTGGCTAAACATCGTTACAACTTGGTGGAAATTCTGAGAAACTCGAACATCACACCAATACGATGCAGAGGCGGTATTGGATATGCGTGTTGCTATTGCGCACAAGAATATACTGACCCAGCCGACCTTAAAGCACATACATTAAACGAACATGAAGAAAATAAGAGGCTACGTCTATTGGACGGAAAAGACTTGTATAAATTTCACGCTAAACTTGATATAACTGAACTGAAATGTAAGATTTGTGAAACAAAAATCAATACTCTGGAACAATTTATCGACCATCTGATTAATAATCATCACATCAGCCTGCATAAAGATATAAAGAACCAGTTGTTCCCATTTAAGTTCGATCAAGAAGCACTGAGGTGCTGCATATGTGACGGTGTTTTTCACAAATTCAAATCGCTCCTGGAACACATGAACGTACACTATCGGAACTACGTTTGCAAAGACTGTGATGCAGGTTTCGTTAATCGCAGCAATTTAACCCAACACGCGAAACGCCATCAGCTGGGCACATTCAACTGTGATTTTTGCTCAAAAGTATTCGATACATTTAGAAAGAAACGGTCTCACGAAAAATGCGTCCACACTCATTCACAGTCACTCAACAAGTGCGGTTATTGTAATGAAAAATTTAGAGATTACAGCAGAAAAGAGAAGCATTTAATAGATGTTCACGGTGTTATTAACAAGGAGACTAAATGCCAGGCGTGCGATAAAACTTTTAAAAATCAAAAGGAATGCAATTCGCACATAAAAAGATTGCACCTAATGGACAAGCGTCACAAATGTTCCGAATGTGATATGGCGTTTTATACCTCTGGCGAGTTGAAGAATCACGCTGTAAAACATACGGGTGAACGTAGTTTTGTGTGTGATGTGTGTCATAAAGCGTATGGACGGCAGAAGACACTCAAAGAACATATGCGTATACATAAAGATGATAGGCGGTTTAAATGTGAGCATTGTGGCAAAGCGTTTGTTCAGAAATGTGGGTGGCGGGGACATATGTGGGCGAAACACGGCGAGCAAAATTAA
- Protein Sequence
- MELTIQESEQGSVKPVGLAGTRNPELKKHFDNLELILMWSNATPIKTYGGKGYTCSYCLQQFLVPADLKKHTQETHSKIVGPIVKKSDLRGFHMKLDITDLECVCTKTLDDIEELVDHLCEEHDLYFHTDIKNYIIPIKFYNDELRCYICVNKFCSFKMLIKHMNVHFRNFVCNVCDEGFVYSKQLKNHSATHLTGSFKCDSCDKSFDTKQKCRYHIRSVHSMKARNKCVYCGEFFRDYRTKISHQYKVHGVACVFKCTACDRSFISQRGYQTHMQRYHLMERRHPCKYCDMRFYSTSELKCHLAKHNIEVPVFKCDICMKSYKRKTTLRNHLRIHSDDRRYRCEVCSRTFVHKCSWRSHLTSKHGIIQPKVSYCPRRSHTNDLIDDQSVKKQREKKGVELAKHRYNLVEILRNSNITPIRCRGGIGYACCYCAQEYTDPADLKAHTLNEHEENKRLRLLDGKDLYKFHAKLDITELKCKICETKINTLEQFIDHLINNHHISLHKDIKNQLFPFKFDQEALRCCICDGVFHKFKSLLEHMNVHYRNYVCKDCDAGFVNRSNLTQHAKRHQLGTFNCDFCSKVFDTFRKKRSHEKCVHTHSQSLNKCGYCNEKFRDYSRKEKHLIDVHGVINKETKCQACDKTFKNQKECNSHIKRLHLMDKRHKCSECDMAFYTSGELKNHAVKHTGERSFVCDVCHKAYGRQKTLKEHMRIHKDDRRFKCEHCGKAFVQKCGWRGHMWAKHGEQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01206756; iTF_01202649;
- 90% Identity
- iTF_01206756; iTF_01202649;
- 80% Identity
- -