Pbra015721.1
Basic Information
- Insect
- Pieris brassicae
- Gene Symbol
- -
- Assembly
- GCA_905147105.1
- Location
- LR989946.1:3006675-3009369[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.097 8 7.4 0.3 1 23 55 78 55 78 0.93 2 19 0.0038 0.32 11.8 4.0 2 23 148 169 147 169 0.97 3 19 5e-05 0.0041 17.8 0.3 1 23 173 195 173 195 0.97 4 19 0.012 0.98 10.3 3.9 1 23 200 223 200 223 0.93 5 19 0.011 0.89 10.4 1.1 2 23 230 252 229 252 0.95 6 19 0.00023 0.019 15.7 1.9 1 23 258 281 258 281 0.98 7 19 0.034 2.8 8.8 5.2 1 23 287 309 287 309 0.95 8 19 3.5e-06 0.00029 21.4 2.6 1 23 316 338 316 338 0.99 9 19 0.0059 0.49 11.2 5.8 1 23 344 367 344 367 0.96 10 19 0.0028 0.23 12.3 1.3 1 23 432 455 432 455 0.94 11 19 0.18 15 6.6 0.8 2 23 482 504 481 505 0.93 12 19 0.043 3.6 8.5 3.0 2 23 527 548 526 548 0.97 13 19 3.1e-06 0.00026 21.6 0.3 1 23 552 574 552 574 0.98 14 19 5.5 4.5e+02 1.9 5.1 1 19 579 597 579 602 0.87 15 19 0.016 1.3 9.9 0.8 2 23 610 632 609 632 0.91 16 19 4.6e-05 0.0038 17.9 2.2 2 23 640 662 639 662 0.96 17 19 0.00016 0.014 16.1 1.1 1 23 668 690 668 690 0.95 18 19 2.7e-06 0.00022 21.7 1.5 1 23 696 718 696 718 0.98 19 19 0.00058 0.048 14.4 1.7 1 20 724 743 724 743 0.95
Sequence Information
- Coding Sequence
- ATGGTCGTGTATGCCGTCACGGTGCCAAAGCTCCGTAACACTCCCAAACCTGTCGGATTAGCAAGTACCAGGAACCCAGAATTAAAAAAACATTTCGATAATATAGAGCTCATATTAAAGTGGTCCAATGCGACTCCAATCAAGACGTATGGCGGTAAAGGCTATACGTGCTCCTACTGTCTACAACAATTCCTAGTACCAGCTGATCTAAAGAAGCATACAATTGAAACACATAGCAAAGTTGTAGGCCCAATAGTAAAAAAGTCTGACTTAAGCGTTTTTCATATGAAACTAGACATTACTGACTTGGAATGTGTATGTACAAGAACACTTGATGATATAGAGGAGCTTGTAGATCATTTGATTGAACAACACGATTTATATTTTCATACTGATGTCAAAAATTACATGATACCTATTAAGTTTAACAACGATGAACTCCGATGCTACATATGTAAAAACAAATTTTGTTCGTTTAAAATGCTTATAAAGCACATGAACGTACATTTTAGAAATTTCGTCTGTAACGTTTGTGACGAGGGCTTCGTTTATAGTAAGCAGTTGAAGAATCATTCGGCAACACATATGACTGGGTCCTTCAAATGTGATAATTGTGATAAGTCATTTGACACAAAGCAAAAGTGTGGGTACCATATAAGATCCGTGCATTCTATGAAAGCGCGAAATAAATGCGGGTACTGCGGAGAGTTTTTTAGGGACTACCGTACCAAAATTTCACACCAGTACAAAGTGCATGGGGTGGCATGTGTCTTCAAATGTACCGCATGCGAGAGAAGCTTTATAAGCCAGCGGGGCTATCAAACTCACATGCAAAGGTATCACCTAATGGAAAGACGACATCCCTGCAAATATTGTGATATGAAGTTCTACTCAACTTCCGAATTAAAATGCCATCTTGCCAAACATAATATTGAAGTCCCTGTGTTCAAGTGCGACATTTGTATGAAATCGTATAAGAGAAAATCGACGCTACGTAATCATTTGAGAATCCATTCTGATGATAGGCCATACAGATGTGAGGTCTGTAGTAGAACCTTCGTCCATAAGTGTAGTTGGAGGAGCCATTTGACCTCTAAACATGGCATTATACAACCCAAAGTATCGTCGTCTTATTGTCCACGACGTAGCCACACAAATGATCTTATTGATGATCAGAGTGTCAAAAAACAAAGAGAAAAGAAAGGTGTAGAATTGGCTAAACATCGTTACAACTTGGTGGAAATTCTGAGAAACTCAAACATCACACCAATACGATGCCGAGGCGGTATTGGATATGCGTGTTGCTATTGCGCACAAGAATATACTGACCCAGCACATCTTAAAGCACATACATTGAACGAACATGAAGAAAATGAAAGGCTACGTCTATTGGACGGAAAAGACTTGTATAAATTTCACGCTAAACTTGATATAACTGAACTGAAATGTACGATTTGTGAAACAAAAATCAACAGTCTGGAACAATTTATCGACCATTTGATTAATAATCATCACATCAGCCTGCATACAGATATAAAGAATCAGTTGTTCCCATTTAAATTCGATAAAGAAGCACTGAGGTGCTGCATATGTGACGGTGTTTTTCACAAGTTCAAATCCCTCCTTGAACACATGAACGTACACTACCGGAACTATATTTGTAAAGACTGTGATGCAGGTTTCGTCAATCGCAGTAATTTAACTCAACACGCAAAAAGCCATCAGCTTGGCACGTTCAATTGTGATTTTTGCTCGAAAGTATTCGATACATTTAGAAAGAAACGGTCCCACGAAAAATGCGTCCACACCCATTCACATACACTCAACAAATGCGGTTATTGTAATGAGAAATTTCGGGATTACAGCAGAAAAGAGAAGCATTTAATCGATGTTCACGGTGTTATTAACAAGGATACAAAGTGTCAGGCGTGCGACAAAACATTTAAAAATCAAAAGGAATACAATTCACACATAAAAAGGTTGCATCTAATGGACAAGCGGCACAAATGTTCCGAGTGTGATATGGCCTTTTTTACTTCTGGCGAGTTGAAGAATCACGCCGTGAAACATACGGGGGAACGTAGTTTTGTGTGTGATGTGTGTCATAAAGCGTATGGACGGCAGAAGACACTCAAAGAACATATGCGTATACATAAAGATGATAGGCGGTTTAAGTGTGAGCATTGTGGCAAAGCATTTGTCCAGAAATGTGGATGGCGTGGACACATGTGGGCGAAACACGGAGAGCATAACTGA
- Protein Sequence
- MVVYAVTVPKLRNTPKPVGLASTRNPELKKHFDNIELILKWSNATPIKTYGGKGYTCSYCLQQFLVPADLKKHTIETHSKVVGPIVKKSDLSVFHMKLDITDLECVCTRTLDDIEELVDHLIEQHDLYFHTDVKNYMIPIKFNNDELRCYICKNKFCSFKMLIKHMNVHFRNFVCNVCDEGFVYSKQLKNHSATHMTGSFKCDNCDKSFDTKQKCGYHIRSVHSMKARNKCGYCGEFFRDYRTKISHQYKVHGVACVFKCTACERSFISQRGYQTHMQRYHLMERRHPCKYCDMKFYSTSELKCHLAKHNIEVPVFKCDICMKSYKRKSTLRNHLRIHSDDRPYRCEVCSRTFVHKCSWRSHLTSKHGIIQPKVSSSYCPRRSHTNDLIDDQSVKKQREKKGVELAKHRYNLVEILRNSNITPIRCRGGIGYACCYCAQEYTDPAHLKAHTLNEHEENERLRLLDGKDLYKFHAKLDITELKCTICETKINSLEQFIDHLINNHHISLHTDIKNQLFPFKFDKEALRCCICDGVFHKFKSLLEHMNVHYRNYICKDCDAGFVNRSNLTQHAKSHQLGTFNCDFCSKVFDTFRKKRSHEKCVHTHSHTLNKCGYCNEKFRDYSRKEKHLIDVHGVINKDTKCQACDKTFKNQKEYNSHIKRLHLMDKRHKCSECDMAFFTSGELKNHAVKHTGERSFVCDVCHKAYGRQKTLKEHMRIHKDDRRFKCEHCGKAFVQKCGWRGHMWAKHGEHN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01205910;
- 90% Identity
- iTF_01205910;
- 80% Identity
- -