Pnap002494.1
Basic Information
- Insect
- Pieris napi
- Gene Symbol
- retn
- Assembly
- GCA_905475465.1
- Location
- FR997694.1:14284786-14395679[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-26 5.8e-23 81.5 0.0 1 89 185 271 185 271 0.96 2 2 7.1 2.2e+04 -3.6 0.0 25 38 395 408 363 409 0.69
Sequence Information
- Coding Sequence
- ATGGCAGACGCCGACCGTGACTCTGATCTAGGAGACGATAGCCCAGTGTCAGCCCGGTCGGAGGGAGAGTCGTCCGGTGAGCAATCCTGCGAGAGCTCGGACGAAGGTGTAGGCAGAGACGCCCCCAGCATCCAACAACACCCACAACACCAGCCCATGCCTCATCCGCACCAGCACAACTTGACACACCACGCGATGAATCATCAGCAAATAAATCTCAACCATCAGCTTCAGCGGAATTCACCGAGACCCATGGAGAGAGAGGTCCGGGACGACTTCGAATCTCTGAAGACATCACTACACCCACACCTCTCTTCTCTCGCATCTCTGGCTCAAGGCGCCCCCCTTTCGACACCTAGCGTGTTCGCCATGGCAGGTGGAGGTCCAGGGGGATTCTATGCTCCCCCGGCGTTCCTCGCCCCAGCGCCCCCTCCACCGGCTCCGCCGGCAGGGTCTGCCTCGTCCTCCTCTTCCGAGGGCAGCGCCGCAGGGTGGAGCTTTGAAGAGCAATACAAGCAGGTCCGTCAGCTTTATGAGATCAGTGACGATCCGCAGAGGAAGGAGTTCTTAGATGACCTGTTCTCCTTCATGCAAAAAAGAGGAACGCCTATCAACAGATTACCGATAATGGCGAAGTCTGTGCTGGATCTGTATGAATTGTACAACTTGGTGATAGCTCGTGGTGGATTGGTGGAGGTGATCAACAAGAAACTCTGGCAGGAGATCATCAAGGGACTTCGGCTGCCATCGTCTATCACTTCGGCTGCATTTACACTGAGAACACAATATATGAAGTATTTATACGACTATGAGTGCGAGAAGAAAAACCTGTCAACCCGCAGTGAGCTGGACGCAGCCATCGAGGGCAACAAGCGGGAGGGGCGCCGTGCCTCTGGACAGTACGACGCACAGGCAGCACTCTCTATGCCCCCCCTGAACCGTGGAGTCCCGGCGTCCCTCGCGCAGCTGTCCCAGCACATGCAGCCCCTTTCCCTGTCGCTGGGGGGCACTGTGCCCCGTCTGCCCCCTCTGCCTCCACACGCACCTCACATCTCGCAGCACGACATCGAGTACCGAGTCCGCGAGTACATGAAGATGATACAGCAGCAACGCGAGCTTATCAGAAATGGTTCTGAATCACCGCCGGGTGCGCCGATGATGTCTCCCCGCGACGCGTTGTCCGCCATCGACGTGTCGCGTCTCACTCTGTGGTCTCTGTACAACAACAACAACAACAGCCCGCAACCGGACATCGAACCGCAACGCATTCCGCATTTCAGAGAGGCGTTAAACCTGAGCGAGAGCCCGAACTCCAGTAACGGCGGCATAAAACGCGAGGCCTGCCGCTCCCCCCCTCCGCCGGCCAAACGCCGCACCCCTCGGCCCCCCTCTCCCGCGCCCCGCTCGCCCCCCGACACCAAGCCCATCGCGCACCTCAACGGCAACTCCGGCCTCAACAACGGCGTCAGTGGCGCCGCCTTCAAGATCTCCACTCGGGGTGACGCAAGCACAGGTGATCAAAAACTCGTCGTATCCATAGAGCTCAACGGTGTGACATACGAAGGTGTGCTCTTCCCCTCACAAAACGGAAACGGGCAAAACCACCGACAAATGGTTTCTTAA
- Protein Sequence
- MADADRDSDLGDDSPVSARSEGESSGEQSCESSDEGVGRDAPSIQQHPQHQPMPHPHQHNLTHHAMNHQQINLNHQLQRNSPRPMEREVRDDFESLKTSLHPHLSSLASLAQGAPLSTPSVFAMAGGGPGGFYAPPAFLAPAPPPPAPPAGSASSSSSEGSAAGWSFEEQYKQVRQLYEISDDPQRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALSMPPLNRGVPASLAQLSQHMQPLSLSLGGTVPRLPPLPPHAPHISQHDIEYRVREYMKMIQQQRELIRNGSESPPGAPMMSPRDALSAIDVSRLTLWSLYNNNNNSPQPDIEPQRIPHFREALNLSESPNSSNGGIKREACRSPPPPAKRRTPRPPSPAPRSPPDTKPIAHLNGNSGLNNGVSGAAFKISTRGDASTGDQKLVVSIELNGVTYEGVLFPSQNGNGQNHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00318670;
- 90% Identity
- iTF_01206311;
- 80% Identity
- -