Pmel024187.1
Basic Information
- Insect
- Pieris melete
- Gene Symbol
- -
- Assembly
- GCA_963693345.1
- Location
- CAVNZK010000346.1:207321-215976[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0025 0.25 12.6 2.5 2 23 324 345 323 345 0.96 2 11 0.0099 0.99 10.7 0.3 1 23 349 371 349 371 0.98 3 11 0.0077 0.77 11.0 3.8 1 23 376 399 376 399 0.98 4 11 4.6e-05 0.0046 18.0 0.9 1 23 403 426 403 426 0.95 5 11 0.11 11 7.4 0.4 2 22 438 458 438 462 0.91 6 11 0.00019 0.019 16.1 0.3 1 23 469 492 469 492 0.96 7 11 0.21 21 6.5 0.1 2 23 508 530 507 530 0.93 8 11 1.5e-05 0.0015 19.6 0.4 1 23 541 563 541 563 0.96 9 11 2.1e-05 0.0021 19.1 3.8 1 23 569 592 569 592 0.97 10 11 2.1e-06 0.00021 22.3 2.4 1 23 598 620 598 620 0.97 11 11 0.00016 0.016 16.4 1.2 1 23 626 649 626 649 0.98
Sequence Information
- Coding Sequence
- ATGGAAAACTTAAAAGTTTGCAGGCTTTGTCTTACTACtgatattaaacttaatgtTATTCAGTCAACTTCTTTGGAATACTACTATGAATTATTAACGGGAACAgatCCTCTATATGAATATAAGATGCCAACATATGCTTGCTACTTGTGTGTCGCTTTGTTGAGGAAGTATTTTCTATTTAGACAAAAATGCTTAGAAGTTCAAAGTATGTTGCAAAGGATTGTCATTGAAAAAGGACAGGTAACAAAAGCAGATATAACACAGATTCagaaaaatcatattaacaaTATGGGGATTACTCATCATGTGATTAATATAGATATTGACATAAATTCAGCTACATGTGATACAAAAATTGCagagaaaatgaaaaatgaaataaaccaTGAAAAGGTTGCAACATTTATGTTTAGTGAAGATGACTTGAGCATTAAAAGGGAATTTGTCAAAACCCCAATAaagaatgaaatttttattagaaataactTTAGTATTACTGATATAGAAGATATAAAGAAAGAAACTAGTATTCCCTCAGGAAGGGATTTACAAAAGCATGAtaatttggaaataaaaaataatggacaaacacaaattaaattaaatttaagtgaTGATAGTTTAAGAGGTACAGAATCTTCAGATGATGATCAGAAGTTAGTTAATTtggtaaataaaagtaaagtAAAGACAAAATCAATAATAGGATTGAGAAGAAAAGAAAGATCTCAAAGAATCAAGcaaacaaagaaaaacataCCTACTATTCATGATAAGGATTTAGAggaatttcttatatttatttatttgacgAAAGAAGAACAATTGGAAGAGTTAAGAAAGCGTCGCGAATCTGAAGAGTTCCGGCAATCTCAACACAAATGTGATAAATGTTGTAAGACATTCCTGAATGAACAATCTGCTTCAAACCATGCAGTTAAACATGACGagtCACGGGGTAGTTTGGAGTGTGACATTTGTAAGCTGCGTTTCAAGACCCGACGCAAGTTTAGCCAGCATTACTCAATGCATCCACGGCGCTATGTCTGCAGAAACTGTCCTAGAGTGCTTAGTTCACTctACCAAGCAAGATTACATGTTCGCTATCATCAAGGAGTGAAGTATAAATGCCCACACTGTGAGGAAGTGCATGTtAACAAATCAACGTACTTGAACCATTTACGCAGTAAGCACCCCGCGGACTTTACGTGCGAATTGTGCGGCGCCGCGTTCGTTACGCAACATGGCCTCAATCGGCATAAAAAGGCGAAACATcgaaatGAAAATTCGAGCGACGCGGACGCACGGCGCTGCGAACTGTGTAACATTCAGTTCGCGAATGTAAAGGCTTACGAACGACACAAGATCACATCCCAAAAGCACGCTGATATCACAAACCAGTTCAGTTGCCTTGAATGCGGAGAAGTATTCTCGACGAATGATGATAGGCGTGATCATGCGCGACTCAAGCATAAGCGCGATCTTAAGCTTGGTCCAGATGACTGCACTTGGCCTATACAATGTCCTCATTGTCCAGAAAAGATACCGAATGCAATGGCTAATTGGTCTCACTATAGAGAGCGTCACCCTGACAAGAAATATCCTGTTAGGGACCATCACGTGTGTCAATACTGCGGGAAGGGATTTGCGACAAAGGCTGGTTTGGAGTCGCATAAAGCGAGTCACAGTAATGAATACGCACACAAATGCAGTGTTTGCGGCAAGGGTTTTCGTCACCGTGATGGGATGATGAAGCACCAGAAAAGCGTCCATTCAGATACGAGACCTCATATGTGCTCGCTCTGTGGAAGGACGTTCAAATTAAACAGCGCTCTTGTCAAACATCAACGGACACATACAGGTGAGCGACCATTCAAGTGCGAAGAATGCGGAAAGTCTTTCGGCTTCAGCACTACACGTAATATTCACTACCAAACAGTTCACTTAAAACTGCCTAATCCTTATGATCGTTCACGTAAGAAAAAGCTTGcagaaactataaaataa
- Protein Sequence
- MENLKVCRLCLTTDIKLNVIQSTSLEYYYELLTGTDPLYEYKMPTYACYLCVALLRKYFLFRQKCLEVQSMLQRIVIEKGQVTKADITQIQKNHINNMGITHHVINIDIDINSATCDTKIAEKMKNEINHEKVATFMFSEDDLSIKREFVKTPIKNEIFIRNNFSITDIEDIKKETSIPSGRDLQKHDNLEIKNNGQTQIKLNLSDDSLRGTESSDDDQKLVNLVNKSKVKTKSIIGLRRKERSQRIKQTKKNIPTIHDKDLEEFLIFIYLTKEEQLEELRKRRESEEFRQSQHKCDKCCKTFLNEQSASNHAVKHDESRGSLECDICKLRFKTRRKFSQHYSMHPRRYVCRNCPRVLSSLYQARLHVRYHQGVKYKCPHCEEVHVNKSTYLNHLRSKHPADFTCELCGAAFVTQHGLNRHKKAKHRNENSSDADARRCELCNIQFANVKAYERHKITSQKHADITNQFSCLECGEVFSTNDDRRDHARLKHKRDLKLGPDDCTWPIQCPHCPEKIPNAMANWSHYRERHPDKKYPVRDHHVCQYCGKGFATKAGLESHKASHSNEYAHKCSVCGKGFRHRDGMMKHQKSVHSDTRPHMCSLCGRTFKLNSALVKHQRTHTGERPFKCEECGKSFGFSTTRNIHYQTVHLKLPNPYDRSRKKKLAETIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00879095;
- 90% Identity
- iTF_01206810; iTF_01203484; iTF_01202724; iTF_01206029; iTF_01204315;
- 80% Identity
- -