Pman004957.1
Basic Information
- Insect
- Pieris mannii
- Gene Symbol
- -
- Assembly
- GCA_029001895.1
- Location
- CM054831.1:4715897-4725056[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0027 0.23 12.6 2.5 2 23 321 342 320 342 0.96 2 11 0.011 0.9 10.7 0.3 1 23 346 368 346 368 0.98 3 11 0.0083 0.71 11.1 3.8 1 23 373 396 373 396 0.98 4 11 5e-05 0.0042 18.0 0.9 1 23 400 423 400 423 0.95 5 11 0.024 2 9.6 0.4 2 22 435 455 435 459 0.91 6 11 0.00021 0.018 16.1 0.3 1 23 466 489 466 489 0.96 7 11 0.22 19 6.5 0.1 2 23 505 527 504 527 0.93 8 11 4.2e-05 0.0036 18.3 0.3 1 23 538 560 538 560 0.94 9 11 2.2e-05 0.0019 19.1 3.8 1 23 566 589 566 589 0.97 10 11 2.3e-06 0.00019 22.3 2.4 1 23 595 617 595 617 0.97 11 11 0.00017 0.015 16.4 1.2 1 23 623 646 623 646 0.98
Sequence Information
- Coding Sequence
- atggaaaacttaaaagtTTGTAGGCTTTGTCTTACAACTGATATTAAACTTAACATTATTCATTCAACTTCATTGGAATACTACTATGAATTACTAACCGGAACTGATCCTCTATATGAATATAGGATGCCAACATATGCATGCCACTTATGTATGGCTTTGTTGAGGAAGTATTTTCTGTTTAGACAAAAATGCTTAGAAGTTCAAAGTATGTTGCAAAGGATTGTCATTGAAAAAGgacagGTAACAAAGGCAGATATAACTCAGATTCagaaaaatcatataaataatatgggCATTACTCATCATGTGATTAATATAGATATTGACATAAATTCAGCTACATGTGATACAAAAAGTGCagagaaaatgaaaaataaaataaaccatGAAAATGTTGCAACATTTATGTTTAGTGAAGATGACTGGAGCATTAAAAGAGAAGCAGCCAACACTCCAATAAAgcatgaaatatatattagaaataactttattactGATATAGAAGATATAAAGATAGAAACTAGTAGTCCCTTGGGAATGGATTTCCAAAAGCCTGAtaatttggaaataaaaaattatggacaaacaaaaattcaattaaattataatagtttaaaaggTGCAGAGTCTTCAGATGATGACCAGAAATTAGTaaatttggtaaaaaaaagtaaagTAAAGACAAAATCAATAATAGGATtaagaagaaaagaaagagCTCAAAGAATCAAGCAAACAAAGAAAAACACACCTACTATTCATGATAAGGATTTAGAggaatttgttatatttatttatttgacgAAAGACGAACAATTGGAAGAGTTAAGAAAGCGTCGAGAATCTGAAGAGTTCCGGCAATCTCAACACAAATGTGATAAATGTTGTAAGACGTTCCTGAATGAAAGATCTGCTTTAAACCATGCAGTTAAACATGACGAgtcACGGGGTAGTTTGGAGTGTGACATTTGTAAACTACGTTTCAAGACACGACGCAAGTTTAGCCAGCATTACTCGATGCATCCTCGGCGCTATGTTTGCAGAAACTGTCCTAGAGTGCTAAGTTCACTCTACCAAGCAAGATTACATGTACGCTATCATCAAGGAGTGAAGTATAAATGTCCACACTGTGAGGAAGTGCACGTTAACAAATCAACGTATTTAAACCACTTACGGAGTAAGCACCCCGCAGATTTCACGTGCGAATTGTGCGGCGCCGCGTTCGTTACGCAACATGGCCTCAATCGGCACAAAAAGGCGAAACATCGAAATGAAAATTCGAGCGACACGGACGCACGGCGCTGCGAACTGTGTAACATTCAGTTCGCGAATGCAAAGGCTTACGAACGACACAAGATCACATCCCAAAAGCACGCTGATATCACAAACCAGTTCAGTTGCCTTGAATGCGGAGAAGTATTCTCGACGAACGACGACAGGCGTGATCATGCGCGACTCAAGCATAAGCGTGATCTTAAGCTTGGTCCAGATGACTGTACTTGGCCTATACAATGTCCTCATTGTCCAGAAAAGATACCGAATGCAATGGCGAATTGGTCTCACTATAGAGAGCGTCACCCTGACAAGAAATATCCTGTTAGGGACCACCACGTGTGTCAATACTGCGGGAAGGGATTTGCGACAAAGGCTGGTCTGGAGTCACATAACGCGAGTCACAGTAATGAATACGCGCACAAATGCAGTGTTTGCGGCAAGGGCTTTCGTCACCGTGATGGAATGATGAAGCACCAGAAGAGCGTCCATTCAGATACGAGACCTCATATGTGCTCGCTCTGTGGAAGGACGTTCAAATTAAACAGCGCTCTTGTCAAACATCAACGGACACATACAGGTGAGCGACCATTCAAGTGTGAAGAATGCGGGAAGTCCTTCGGCTTCAGCACTACACGTAATATTCACTACCAAACAGTTCATTTAAAACTGCCTAATCCTTATGATCGTTCACGTAAGAAAAAACTTGcagaaactataaaataa
- Protein Sequence
- MENLKVCRLCLTTDIKLNIIHSTSLEYYYELLTGTDPLYEYRMPTYACHLCMALLRKYFLFRQKCLEVQSMLQRIVIEKGQVTKADITQIQKNHINNMGITHHVINIDIDINSATCDTKSAEKMKNKINHENVATFMFSEDDWSIKREAANTPIKHEIYIRNNFITDIEDIKIETSSPLGMDFQKPDNLEIKNYGQTKIQLNYNSLKGAESSDDDQKLVNLVKKSKVKTKSIIGLRRKERAQRIKQTKKNTPTIHDKDLEEFVIFIYLTKDEQLEELRKRRESEEFRQSQHKCDKCCKTFLNERSALNHAVKHDESRGSLECDICKLRFKTRRKFSQHYSMHPRRYVCRNCPRVLSSLYQARLHVRYHQGVKYKCPHCEEVHVNKSTYLNHLRSKHPADFTCELCGAAFVTQHGLNRHKKAKHRNENSSDTDARRCELCNIQFANAKAYERHKITSQKHADITNQFSCLECGEVFSTNDDRRDHARLKHKRDLKLGPDDCTWPIQCPHCPEKIPNAMANWSHYRERHPDKKYPVRDHHVCQYCGKGFATKAGLESHNASHSNEYAHKCSVCGKGFRHRDGMMKHQKSVHSDTRPHMCSLCGRTFKLNSALVKHQRTHTGERPFKCEECGKSFGFSTTRNIHYQTVHLKLPNPYDRSRKKKLAETIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00879095;
- 90% Identity
- iTF_01205148;
- 80% Identity
- -