Pmel006542.2
Basic Information
- Insect
- Pieris melete
- Gene Symbol
- -
- Assembly
- GCA_963693345.1
- Location
- CAVNZK010000023.1:223860-226780[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.72 72 4.9 2.6 1 23 80 102 80 102 0.91 2 15 5.9e-06 0.00059 20.9 2.3 2 23 109 131 108 131 0.94 3 15 1.1e-06 0.00011 23.1 0.4 1 23 137 159 137 159 0.98 4 15 9.2e-07 9.2e-05 23.4 1.5 1 23 165 187 165 187 0.99 5 15 0.00058 0.058 14.6 1.1 1 23 193 215 193 215 0.97 6 15 7.6e-05 0.0076 17.4 3.3 1 23 221 243 221 243 0.97 7 15 0.0061 0.61 11.4 3.5 1 23 249 272 249 272 0.91 8 15 0.19 19 6.6 3.7 2 23 319 339 319 339 0.97 9 15 5.4 5.4e+02 2.1 0.2 1 12 345 356 345 359 0.88 10 15 0.00029 0.029 15.5 1.4 2 23 652 674 652 674 0.96 11 15 6e-05 0.006 17.7 0.2 1 23 680 702 680 702 0.94 12 15 0.0032 0.32 12.3 0.6 1 23 708 730 708 730 0.96 13 15 0.011 1.1 10.5 7.8 1 23 736 758 736 758 0.98 14 15 0.00063 0.063 14.5 3.6 1 23 764 786 764 786 0.98 15 15 8.5e-05 0.0085 17.2 0.9 1 23 791 814 791 814 0.98
Sequence Information
- Coding Sequence
- ATGTCATCGTACGAAACATTTTACGCGGCTCTACTCAAGTTTAGAAATCATTACGTTAAACGACACAAGCAGAGTTCTCTCGAATTTACAGAATCGAGCACGGAAGAGGAGATAGAACAGTTAGATGATGTCGAATATGACGATTTGAGTAAGAGTAATATGCGCAGAGACAGAATGGACGATCGGACGAGAATAGAGTTGAACGAGGTGCAGTCAAAGATAAACGGCAAGGTATATTACACTTGCAAGGTTTGCGAAAAGAACTTGAGTTCTGCTCATACGTATTTATTTCACAAGAATATTCACACCGGAGAACGGCCGTGCGTTTGTCACGTATGCGGAAAGACTTTTCGTGCGCCGAGTGGCCTTCAGCGCCATCTAAAGGAAACTCACGAGAGAGTCAAACGATATGTTTGCGCACTTTGTGCTAAAACTTTTGTTAACTCTCAGAATTTACGGCAGCACATGCGCATACACACCGGGGAACGGCCGTATGTGTGTGCCCAATGCGGGAAAAGGTtcacgcagagcggttcgctTCACGTGCATTTAAAGACCCATAGCGATCTATTTCCGTTTAACTGTACGGAATGCGGTGCTCAGTTTCGTTTACGGTCTGGTCTGTCGAAGCACAAACTCAAACACACGGGTGAACGACCGCACGTGTGCGTCAATTGTGGGAAAGGTTTTCGTCAAAAACACGAGCTGAACAGTCACTCGCTCACTCACAGTAATGCTAAACCTTTCGCTTGCACGCTCTGTGGAGCGGCTTTCCGTCAGCGGAGAGCTCTTAGGCATCATTGCAAACGACTGCATGAGTCGAGAGAAACTGCTAACGCTGCCATTGAGAGTGAAGTCACGGCGGGGAATCGTTTCTCCGTTGAACTTGAAAAACATAGCggagaaaaaagctttttgcacgtaaatttttttgaaaacgGTAAAAGTTACGGAACGTGTAAGACttgcaacaaaaaaatatcggcAAGCTGTCTGAGACGGCATGCTCGCTTGCACGACGAAGACAAAACGTACCGTTGCGATGCGTGCGGGCTAGGATTCAAAGAGAGCGCTTTTGCGATgccaaatttaaaagaaaatccgAATTGTACGCTCACGTTTCGGTGCACACCGGAGAAAAGGCTCACATCTGCGAATGCGGGAAAGCATTTAGATTGCGAAGTCAGCTCAATCGCCACGCACACTCCCACGGCACTCGAACGACAGACGATGGCTTTGAGAAATAATAAAGGGCTTTGTTACAGGTCTGAGAGAGTGTCCGAATACCTGGTGCGAATCGTTCCTGCGCCGCTATACACCGAAACCGGCTTTGTTATCAGCTCGACAGAGGCGATTAATAAGAGAACCGATACTTGCCATTTTAACAAACAGGACACGTTTAAATTACTTGCAGATGTCAGTACTATATTTTCCGCGCAACAATCTGAGACAGCCAAAGTACAGTTTATGAAAGAACAATTCGTCCACAATGATACAGATCACGCTAACTGGATACACTATTCGAAACATAACACGTCAGACAAAAAACAACCACTAGATTATAATACGTTTGTCCAAACGAGAAATAATAGCATAGACGGAAGCAGCCATAATCGTGTAGTGTCTGAATTTTCATTACAAACCATCGACAATTCAGTTGAAGACACCAATAATAGGTCGGAAACGAAAGATATACAAAATAGTCCAAACTCCCCAATCTCTACTGGCGCCGAAGTGGCATATGCAGCGTATGATGCGTTGTCATCGAGTACAGACAAGGTAATCGACCGCTTTGAACGAAATGAATTTTCGGATCATAGCGACACGGAGTCGTTCGCTCGCCTGTCCGAATCTGTGTTCGAAGCGATCGAGGATACGCGGGACAGTATTATTGACAAACCGACCGATGAGCTTAGAGTCATAgaaaaatccaaaaaatcaAAGCGGACGAGGACGTGTCCCATTTGTGGAAAAATATATACGGCTTCGTCGAGTTACTTTTACCACATGAAACATTTTCACCGGCAGAGTAAAGAGCACAGTTGTGACGTTTGCGGAAAGAAATTCGGGACCCGCGGAGACCTCGAGCAGCACGGCGCCGTTCACACCGAGGAGTGTAAATACGCGTGTCGATCTTGCGATAAGAAATTTCGTTCGCGAGCGAGTTGGTACATTCACGAACAAATTCACGAGGGCATCAAAAACTACAAATGCTCCTCTTGTGAGAAATGTTTCCGGTGGCGGACGCACTTACAGCGGCATACGTTGCGTCACGCCGCCGAAAAGAAACATGAATGTGCCATGTGCGGACGAGGCTTTTCGGTTCACTGTGACCTCTTACGCCACGCTCGGACGCACGCCGTCGGCAGCTTTGAGTGCGAGGAGTGCCGTGTGAAGTTCGCGCAAATCAGGTACTTAAAAGCGCACATGAGAAAGAAACACAGCGTGACTTCGACGAGCGATATCGGTTAA
- Protein Sequence
- MSSYETFYAALLKFRNHYVKRHKQSSLEFTESSTEEEIEQLDDVEYDDLSKSNMRRDRMDDRTRIELNEVQSKINGKVYYTCKVCEKNLSSAHTYLFHKNIHTGERPCVCHVCGKTFRAPSGLQRHLKETHERVKRYVCALCAKTFVNSQNLRQHMRIHTGERPYVCAQCGKRFTQSGSLHVHLKTHSDLFPFNCTECGAQFRLRSGLSKHKLKHTGERPHVCVNCGKGFRQKHELNSHSLTHSNAKPFACTLCGAAFRQRRALRHHCKRLHESRETANAAIESEVTAGNRFSVELEKHSGEKSFLHVNFFENGKSYGTCKTCNKKISASCLRRHARLHDEDKTYRCDACGLGFKESAFAMPNLKENPNCTLTFRCTPEKRLTSANAGKHLDCEVSSIATHTPTALERQTMALRNNKGLCYRSERVSEYLVRIVPAPLYTETGFVISSTEAINKRTDTCHFNKQDTFKLLADVSTIFSAQQSETAKVQFMKEQFVHNDTDHANWIHYSKHNTSDKKQPLDYNTFVQTRNNSIDGSSHNRVVSEFSLQTIDNSVEDTNNRSETKDIQNSPNSPISTGAEVAYAAYDALSSSTDKVIDRFERNEFSDHSDTESFARLSESVFEAIEDTRDSIIDKPTDELRVIEKSKKSKRTRTCPICGKIYTASSSYFYHMKHFHRQSKEHSCDVCGKKFGTRGDLEQHGAVHTEECKYACRSCDKKFRSRASWYIHEQIHEGIKNYKCSSCEKCFRWRTHLQRHTLRHAAEKKHECAMCGRGFSVHCDLLRHARTHAVGSFECEECRVKFAQIRYLKAHMRKKHSVTSTSDIG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01203437; iTF_01202637;
- 90% Identity
- iTF_01203437;
- 80% Identity
- -