Pbra006751.1
Basic Information
- Insect
- Pieris brassicae
- Gene Symbol
- Zfy1
- Assembly
- GCA_905147105.1
- Location
- LR989933.1:184778-187701[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.67 55 4.8 2.6 1 23 80 102 80 102 0.90 2 18 5.5e-06 0.00046 20.8 2.3 2 23 109 131 108 131 0.94 3 18 1.1e-06 8.9e-05 23.0 0.4 1 23 137 159 137 159 0.98 4 18 1.2e-06 0.0001 22.8 1.6 1 23 165 187 165 187 0.98 5 18 0.00027 0.023 15.4 1.0 1 23 193 215 193 215 0.97 6 18 7.1e-05 0.0059 17.3 3.3 1 23 221 243 221 243 0.97 7 18 0.0057 0.47 11.3 3.5 1 23 249 272 249 272 0.91 8 18 0.092 7.7 7.5 2.1 2 23 320 340 320 340 0.97 9 18 0.00041 0.034 14.9 0.0 1 23 346 369 346 369 0.96 10 18 0.0001 0.0084 16.8 2.6 1 23 375 397 375 397 0.97 11 18 9.3e-05 0.0077 16.9 1.7 2 23 404 425 403 425 0.96 12 18 5.7e-05 0.0047 17.6 0.5 2 23 432 453 431 453 0.96 13 18 8.9e-05 0.0074 17.0 0.8 3 23 697 718 696 718 0.95 14 18 3.5e-05 0.0029 18.3 0.2 1 23 724 746 724 746 0.95 15 18 0.018 1.5 9.7 1.1 1 23 752 774 752 774 0.95 16 18 0.0051 0.42 11.4 8.8 1 23 780 802 780 802 0.98 17 18 0.00039 0.032 15.0 3.1 1 23 808 830 808 830 0.98 18 18 5.7e-05 0.0048 17.6 0.9 1 23 835 858 835 858 0.98
Sequence Information
- Coding Sequence
- ATGTCATCGTACGAAACATTTTACGCGGCTCTAGTCAAGTTTAGAAATCATTATGTCAAACAACACAAGCAGAGCTCTCTCGAATTAATAGAATCCAGTACGGAAGAGGAGACGGAACAGCTAGACGATGTCGAATATGACGATTTGAGTAAGAGTAATATGCGCAGAGACAGAATGGACGATCGGACGAGAATAGAGTTGAACGAGGTGCAGTCGAAGATAAATGGCAAGGTATACTACACTTGCAAGGTTTGCGAAAAGAACTTGAGTTCTGCTCATACGTACTTATTTCACAAGAATATTCACACCGGAGAGCGGCCGTGCGTGTGTCACGTGTGCGGAAAGACCTTTCGTGCGCCGAGTGGCCTTCAGCGCCATCTAAAGGAAACCCACGAGAGAGTCAAACGATATGTTTGCGCACTTTGTGCTAAAACGTTTGTTAACTCCCAGAATTTGAGGCAGCACATGCGCATACACACTGGGGAGCGGCCGTTTGTGTGTGCCCAGTGCGGGAAAAGATTTACGCAGAGCGGTTCGCTTCACGTGCACTTAAAGACCCATAGCGATCTATTTCCGTTTAACTGTACGGAATGCGGTGCTCAGTTTCGTTTACGGTCTGGTCTGTCGAAGCACAGACTCAAACACACGGGTGAGCGACCGCACGTGTGCGTCAATTGCGGGAAAGGTTTTCGTCAAAAACACGAGCTGAACAGTCACTCGCTCACTCACAGCAATGCCAAACCTTTCGCTTGCACGCTCTGTGGAGCGGCTTTCCGTCAGCGGAGAGCACTTAGGCATCATTGCAAACGACTACATGAATCGAGAGAAACTGCTAGCACTGTCGTTAAGAATGAAGTCACAACGGGATATTGTTTCTCCTTCTTTGAACTTGAAAAACATACAGAGGAAAAAGGCTTGTTGCACGTAAATATTTGTAAAAACGGTAAAAGTTATGGAACTTGTGAGACTTGCGACAAAAAAATATCGGCTAGCTGTCTCAGCCGGCATGCGCGCTCGCACGACGAAGACAAAACGTACCGTTGCGATGTGTGCGGGCTCGGATTCAAAGAGGGCGGTAACCTGGCTCGCCATGAGCGCGCAATACACAAAAAGTTGAAACCGTTTGCATGCTTTGTTTGTTCAAACAATTTTTCCAGAAAAAGTCACCTCGAGGATCACATCAAATCTCATTCAGGGAATCGTTACTGCGTTTGCGATCTTTGTGGAAAAGCTTCGAAATCTAGCAATGCATTAAGAATGCACAGGAGAACTCATTTCGTCGAACGTAACATTAAATGCAGCTTTTGCGATGCCAAATTTAAAAGAAAATCTGAATTGTACGCTCACGTTTCGGTGCACACTGGAGAAAAGGCTCACATCTGCGAGTGCGGAAGAGCGTCTGAGAGAGTGTCCGAATACCTGGTGCGAATCGTTCCTGCGCCGATATACACCGACACCGGCTTTGTTATCAGTTCGACAGAGGCGATTAACAAGAGAACCGATACTTGCCATGTTAGCAGACAGGACACGTTCAAATTACTCGCAGATGTCAGTACTATATATTCCGTGCAACAATCCGAGACAGCCAAAGTACAGTTTATGAAACAACAATTCGTCCACACCGATACAGAACACGCTAACTGGATACACTATTCCAAACATAACACGTCAGATAAAAAACAACCACTAGACTATAATAGGTTTGTCCAAACGAGAAATAATTGCATAGACGAAGGCAGCCATAATCGCGTAGTGTCTGAATTTCCATTACAAACAATTGAAGATTCAATTGAAGACACCAATAATAGTACGGAAACGAAAACTATACTAAATAGTCCAAACTCCCCAGTATCTACCGGCGCCGAAACGGCATATGCAGCGTACGATGCGTTGCCATCGAGTACAGACAAGGTCATCGACCGCTTGGAGCAAAATGAATTTTCGGATCATAGCGACACGGAATCGTTCGCTCGCCTGTCCGAATCCGTGTTCGAAGCGATCGAGGATACGCGAGATAGCATTATCGACAAACCGACAGATGAGATTAGAGTCATAGAAAAATGTAAAAAATCAAAGAGGACGCGGCCGTGTCCCATTTGTGGAAAAGTATATACGGCTTCGTCGAGTTACTTTTACCACATGAAACATTTTCACCGGCAGAGTAAAGAGCACAGTTGTGACGTTTGCGGAAAGAAATTCGGGACCCGCGGAGATCTCGAGCAGCACGCCGCCGTTCATACTGCGGAGTGTAAATACGCGTGTCGATCTTGCGATAAGAAATTTCGTTCGCGAGCGAGTCGGTACATTCACGAACAAATTCACGAGGGCGTCAAAAACTACGAATGCTCCACTTGTGGGAAATGTTTCCGATGGCGGACGCACTTACACCGGCATACGTTGCGCCACGCCGCCGAAAAGAAACATGAATGTGCCGTGTGCGGACGGGGCTTTTCGGTTCACTGTGACCTCTTACGACACGCGCGGACGCACGCCGTGGGCAGCTATGAGTGCGAAGAGTGCCGCGTGAAGTTCGCGCAAATCAGGTATTTAAAAGCGCACATGAGAAAGAAGCACAGCGTTACTTCAACGAGCGATATCGGTTAA
- Protein Sequence
- MSSYETFYAALVKFRNHYVKQHKQSSLELIESSTEEETEQLDDVEYDDLSKSNMRRDRMDDRTRIELNEVQSKINGKVYYTCKVCEKNLSSAHTYLFHKNIHTGERPCVCHVCGKTFRAPSGLQRHLKETHERVKRYVCALCAKTFVNSQNLRQHMRIHTGERPFVCAQCGKRFTQSGSLHVHLKTHSDLFPFNCTECGAQFRLRSGLSKHRLKHTGERPHVCVNCGKGFRQKHELNSHSLTHSNAKPFACTLCGAAFRQRRALRHHCKRLHESRETASTVVKNEVTTGYCFSFFELEKHTEEKGLLHVNICKNGKSYGTCETCDKKISASCLSRHARSHDEDKTYRCDVCGLGFKEGGNLARHERAIHKKLKPFACFVCSNNFSRKSHLEDHIKSHSGNRYCVCDLCGKASKSSNALRMHRRTHFVERNIKCSFCDAKFKRKSELYAHVSVHTGEKAHICECGRASERVSEYLVRIVPAPIYTDTGFVISSTEAINKRTDTCHVSRQDTFKLLADVSTIYSVQQSETAKVQFMKQQFVHTDTEHANWIHYSKHNTSDKKQPLDYNRFVQTRNNCIDEGSHNRVVSEFPLQTIEDSIEDTNNSTETKTILNSPNSPVSTGAETAYAAYDALPSSTDKVIDRLEQNEFSDHSDTESFARLSESVFEAIEDTRDSIIDKPTDEIRVIEKCKKSKRTRPCPICGKVYTASSSYFYHMKHFHRQSKEHSCDVCGKKFGTRGDLEQHAAVHTAECKYACRSCDKKFRSRASRYIHEQIHEGVKNYECSTCGKCFRWRTHLHRHTLRHAAEKKHECAVCGRGFSVHCDLLRHARTHAVGSYECEECRVKFAQIRYLKAHMRKKHSVTSTSDIG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01205108;
- 90% Identity
- -
- 80% Identity
- -