Basic Information

Insect: Pieris mannii
Gene Symbol: stc
Assembly: GCA_029001895.1
Location: CM054843.1:9215676-9228952[+]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 2 2.8e+04 -4.3 1.6 15 19 440 444 439 444 0.81

2 13 0.12 1.6e+03 -0.2 0.6 4 10 474 480 473 480 0.93

3 13 3.6e-05 0.49 11.1 18.1 4 19 488 503 486 503 0.93

4 13 7.5e-08 0.001 19.6 12.5 1 18 539 556 539 557 0.98

5 13 0.0014 19 6.0 14.8 1 19 598 616 598 616 0.99

6 13 9.7e-06 0.13 12.9 11.0 1 19 657 679 657 679 0.88

7 13 2 2.8e+04 -5.2 2.2 6 10 709 713 709 713 0.94

8 13 0.015 2e+02 2.7 7.3 1 11 719 729 719 730 0.93

9 13 0.033 4.5e+02 1.6 0.3 3 10 732 739 731 740 0.92

10 13 1e-05 0.14 12.8 13.0 3 19 747 763 745 763 0.91

11 13 2 2.8e+04 -4.8 15.6 1 18 802 818 802 819 0.81

12 13 1.4e-08 0.00019 22.0 12.3 1 17 855 873 855 879 0.84

13 13 0.09 1.2e+03 0.2 14.3 1 16 885 902 885 908 0.80

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	2	2.8e+04	-4.3	1.6	15	19	440	444	439	444	0.81
2	13	0.12	1.6e+03	-0.2	0.6	4	10	474	480	473	480	0.93
3	13	3.6e-05	0.49	11.1	18.1	4	19	488	503	486	503	0.93
4	13	7.5e-08	0.001	19.6	12.5	1	18	539	556	539	557	0.98
5	13	0.0014	19	6.0	14.8	1	19	598	616	598	616	0.99
6	13	9.7e-06	0.13	12.9	11.0	1	19	657	679	657	679	0.88
7	13	2	2.8e+04	-5.2	2.2	6	10	709	713	709	713	0.94
8	13	0.015	2e+02	2.7	7.3	1	11	719	729	719	730	0.93
9	13	0.033	4.5e+02	1.6	0.3	3	10	732	739	731	740	0.92
10	13	1e-05	0.14	12.8	13.0	3	19	747	763	745	763	0.91
11	13	2	2.8e+04	-4.8	15.6	1	18	802	818	802	819	0.81
12	13	1.4e-08	0.00019	22.0	12.3	1	17	855	873	855	879	0.84
13	13	0.09	1.2e+03	0.2	14.3	1	16	885	902	885	908	0.80

Sequence Information

Coding Sequence: ATGTCTCAGTGGAACAATACATATGATTACAATAGCCAAAATCAGGCTCCAAATGCATGGAATTCTGATCCTAATGGTCAATATGGAAGTCAAGTTTACTACAATAGGCAAATGGATCCTAGTGGTAATCAATATGTGAGTTTTAATGAATTTCTATCGCAAATGCAGCAGTCTGGAGTTCCTAGTGTCAACACAGCTCAATATAGTAATGTCCACTATCAGAGTTATCCACCTAACCAATATAATAATGCAAATAGTTATCAGAACTTACCAACAAATGTAAATGCTCAAGCCAATTTTGGATATGGTGCTAGTTCTAGTTATTCAAACAATGTTGAATCTTATGAAACCAATAGTCAAGACCAGTATATTCCTCCACCTGATGGTAATAATTATACCAATGATATGGTTtctaaatcaaaattaacCCCAACTGCCATTGAATTTATTCCTAAAAATTCTTCGTTACAAACTGAAAATAATCAGCCTAATGAGATACAGCATGAACCTTTGGACATAGACCACAGTGGCAGTGGCTCCAGTAGCAATCATACAAAACCGTCAGATTCTAAAAATTGGAGAGAACGACCAAAAAATAAAGCACAAAATAGTTCCTATGATACTAATGGATATGAGAATGGAGGAAACCAAGAACATGATAGCAATGGCAGTCTTcgttatgataataaaaatcgcaaatatgataaaaataatagtcaaAATCATACTAGGCCAGAAAGTAGTCATTATCCCCAAAGTTCTAGAAATAATGATACTAATGCCTATAGtagaaaaaatagaaatgataattataacaatggTGATTCAAACCGTAGAGAAGGGGGCCAAAGTAAATCTAAAGGAATGGGTAGAGATACAGACCCTAGTCGAACTTTCTATAATAGTAACAAGAGTAAAGATAGCCAGGATGTAAGAAATGGGAGAGGGGAGCCTTCTGGAAGGCAACGCTGGCCTGGAAGTCAACGGCTTAAAGCCAATGAACGTTACAGCTATGAAGATGAACAATATGCAAATTCATATCTACAAAATAGAGAAGAGAAAGGAAGGAGCCATGTACCAAGTCCAGCAAGAAGTAAAAAAACAGTTGTTAGTAATAATGCAGgtttaaataaagaaatgacaCAAAGAGAGCGTCTAACAGAACAACTTGATAAAGGTACACTAGAGTGCCTAGTTTGCTGTGAACGAGTAAAACAGTTGGATCCAGTATGGTATTGCACTAATTGTTACCATGTTATGCATCTTCGGTGTATTAGAAAATGGGCTGTTAGCAGTATGGTTGAGGGCAAATGGCGTTGTCCGGCATGTCAAAACACCAGCCAAGACATACCTACAGAGTATAGATGCATGTGTGGTGCAGTTCGTAATCCCGACTACCAGAGAGGTGGCAACACTGCCCATACTTGTGGTAAAGCCTGCAAAAGACCTAGAAGTTGCCCTCATCCATGCACTTTGCTTTGCCACCCAGGACCTTGTCCACCATGCCAGGCTACTATTGCAAAGAATTGTGGCTGTGGTGCGGAATCCCGCTCTGTATTATGCAGCAGCAAGTTGCCGCAGGAATGTGGAAGACAGTGTGGCCGCAAACTTAACTGCGGTGTTCATAGCTGTGCAAATGATTGTCATGATGGACCGTGCGAGCCTTGCGATTTCATTGTGGAACAAGTATGCTACTGCCCAGCCGCTAAAACCCAATCAGTACCATGTACGCCAGAAAGTGGTGACAAGCGTACATTCTCTTGTGGGTCTGCGTGCGCGCGCGTACTGACTTGCGGTGCGCACGTCTGTCGGGACGAATGTCATCCGCCGCCTTGTAAAACATGTCCACGGAGTGTGGAAAATGTGATAACGTGTCCCTGTGGAAACACTAAATTAAAAGAAGGTGAACGCAAAAGTTGTTCGGACCCAATACCGCTGTGTGGTAATATCTGCGCTAAACCACTCATTTGTGGACCGGATAATGATAAACATTTCTGTATGCAAAAGTGCCACGAAGGAGTATGCCCCGAGTGTCCAAACACTACAGTCCTTCAATGCCGCTGTGGTCACTCGACTGTTGATGTGCCTTGCAAAGATCTACCCGGTGCTTATGACAACGTGTTCTGTCAAAAGAAGTGTAATAAGaaaatgTCGTGTGGACGCCATCGCTGCCGCACAGCTTGCTGCGCATCCTCTCACCGCTGCGCAGTGGTTTGTGGGCGTACTTTATCCTGTCAATTACATCGATGTGAGGACTTCTGTCACACAGGACACTGTGCCCCTTGTCAACGGCTGGGATTTGAAGAGCTTCGCTGTGAATGCGGTCTCGAAGTGATCCTGCCCCCGATCCGGTGTGGGGCGAAGCCTCCACCGTGCAGTGCCCCTTGTCGCCGAGAGCGGCCTTGCGGACATCCGCCTCATCACTCGTGCCACTCTGCGGACTGTCCCCCTTGCGTCGTGCTTACCACCAAGACTTGTTATGGAAAGCATGAGgaAAGGAAAACTATACCGTGTTCCCAAGAGGAGTTCTCTTGCGGTCTGCCCTGTGGAAAGCCGTTGCCTTGCGGAAAGCATACTTGTATCAAGATCTGCCACAAGGGGCCGTGTGATACTGACAAATGCAACCAGCCGTGTAACGAAAAAAGGTCATCCTGTGGTCATCCCTGCTCCGGACCGTGTCACGCGACAAATGGCGGCCCATGCCCCAGCACTTCGAATTGCAAGCGAGCCGTTATCGCCACTTGTCCTTGTGGACGCAGGAAGGCCGAAAGGGCCTGTTGCGATAACGCTAGAGATTTTGCCAAGATTTTAAATGCCCTGGCCGCGACGAAGATTCAAGAAGGCGGTATGGTTGACCTGTCAGACGCGCACCGGCCTAGCGCCATGTTGAAAACGCTAGAATGCGATGACGAATGCCGTCAAGAAGCCCGTAGCCGTCAACTCGCGCTCGCTCTGCAGATACGGAACCCGGACGTGTCCGCAAAACTAGCGCCGAGGTACAGCGATACGTGCAGAGCAATGGCTGCTAGGGAACCAAGCTTTGCTCAACATGTGCATGACAAACTCACTGATTTAGTGCAATTGGCTAAAAAGtcaaaacaaaaaacacgcGCACACTCATTCCCGTCGATGAATCGTCCGAAACGTCAATTCATTCACGAAATGTGCGAACACTTTGGTTGTGAGAGCGTCGCGTACGACGCGGAGCCCAATCGCAACGTGGTCGCCACAGCTGATAAGGAGAAGTCATGGCTACCAGCGATGAGTGTGTTGGAAGTATTAGCTCGTGAAGCAGGTAAACGAAGAGTTCCGGGGCCAATACTACGCGCTGCGACCAGTAGCGCCGCTTCCGCTCCAGCGCCTACGCCCGCTACCGCTCCCGCTACTAAATCTTTTGGTGGTTGGGCGACGTTGACTTCGAATAATTCGTGGGCAAGTCGAAGTCAACCTTCAACGTCTGCGGTGGTCAGAAATGCGCCACTTAGACAGGAGTCGCGGCCAAAAATCGACTATTTTGATAACCCACCAGAAGATTAA
Protein Sequence: MSQWNNTYDYNSQNQAPNAWNSDPNGQYGSQVYYNRQMDPSGNQYVSFNEFLSQMQQSGVPSVNTAQYSNVHYQSYPPNQYNNANSYQNLPTNVNAQANFGYGASSSYSNNVESYETNSQDQYIPPPDGNNYTNDMVSKSKLTPTAIEFIPKNSSLQTENNQPNEIQHEPLDIDHSGSGSSSNHTKPSDSKNWRERPKNKAQNSSYDTNGYENGGNQEHDSNGSLRYDNKNRKYDKNNSQNHTRPESSHYPQSSRNNDTNAYSRKNRNDNYNNGDSNRREGGQSKSKGMGRDTDPSRTFYNSNKSKDSQDVRNGRGEPSGRQRWPGSQRLKANERYSYEDEQYANSYLQNREEKGRSHVPSPARSKKTVVSNNAGLNKEMTQRERLTEQLDKGTLECLVCCERVKQLDPVWYCTNCYHVMHLRCIRKWAVSSMVEGKWRCPACQNTSQDIPTEYRCMCGAVRNPDYQRGGNTAHTCGKACKRPRSCPHPCTLLCHPGPCPPCQATIAKNCGCGAESRSVLCSSKLPQECGRQCGRKLNCGVHSCANDCHDGPCEPCDFIVEQVCYCPAAKTQSVPCTPESGDKRTFSCGSACARVLTCGAHVCRDECHPPPCKTCPRSVENVITCPCGNTKLKEGERKSCSDPIPLCGNICAKPLICGPDNDKHFCMQKCHEGVCPECPNTTVLQCRCGHSTVDVPCKDLPGAYDNVFCQKKCNKKMSCGRHRCRTACCASSHRCAVVCGRTLSCQLHRCEDFCHTGHCAPCQRLGFEELRCECGLEVILPPIRCGAKPPPCSAPCRRERPCGHPPHHSCHSADCPPCVVLTTKTCYGKHEERKTIPCSQEEFSCGLPCGKPLPCGKHTCIKICHKGPCDTDKCNQPCNEKRSSCGHPCSGPCHATNGGPCPSTSNCKRAVIATCPCGRRKAERACCDNARDFAKILNALAATKIQEGGMVDLSDAHRPSAMLKTLECDDECRQEARSRQLALALQIRNPDVSAKLAPRYSDTCRAMAAREPSFAQHVHDKLTDLVQLAKKSKQKTRAHSFPSMNRPKRQFIHEMCEHFGCESVAYDAEPNRNVVATADKEKSWLPAMSVLEVLAREAGKRRVPGPILRAATSSAASAPAPTPATAPATKSFGGWATLTSNNSWASRSQPSTSAVVRNAPLRQESRPKIDYFDNPPED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01202930;
90% Identity: iTF_01206210; iTF_01205381; iTF_01203724; iTF_01207033; iTF_01202930;
80% Identity: -