Pman020688.1
Basic Information
- Insect
- Pieris mannii
- Gene Symbol
- -
- Assembly
- GCA_029001895.1
- Location
- CM054850.1:2120971-2126675[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.54 45 5.4 1.0 1 23 28 50 28 50 0.95 2 19 0.0097 0.83 10.8 0.1 2 23 78 100 77 100 0.91 3 19 1.7e-05 0.0014 19.5 4.4 2 23 124 145 123 145 0.97 4 19 0.054 4.6 8.5 1.2 2 23 149 170 148 170 0.96 5 19 0.0029 0.25 12.5 3.3 1 23 175 198 175 198 0.96 6 19 2.1 1.8e+02 3.5 2.8 2 23 209 231 208 231 0.90 7 19 0.0094 0.8 10.9 0.7 1 23 237 260 237 260 0.94 8 19 7.7e-06 0.00066 20.6 1.9 2 23 265 286 264 286 0.96 9 19 3.3e-05 0.0028 18.6 2.6 1 23 292 314 292 314 0.98 10 19 0.0016 0.14 13.3 3.2 1 23 320 343 320 343 0.97 11 19 0.21 18 6.7 0.5 1 23 388 410 388 410 0.88 12 19 0.044 3.8 8.8 1.2 2 23 439 461 438 461 0.96 13 19 0.00016 0.014 16.4 2.2 3 23 486 506 484 506 0.96 14 19 0.00086 0.073 14.2 0.1 1 23 509 531 509 531 0.97 15 19 0.00028 0.024 15.7 3.4 1 23 536 559 536 559 0.97 16 19 1.4 1.1e+02 4.1 4.0 2 23 569 591 569 591 0.95 17 19 0.0014 0.12 13.5 3.0 1 23 597 619 597 620 0.93 18 19 2.1e-07 1.8e-05 25.5 2.0 2 23 625 646 624 646 0.97 19 19 0.00018 0.015 16.3 3.5 1 23 652 674 652 674 0.98
Sequence Information
- Coding Sequence
- ATGACAGTGTATGAAAGACTGAACGCGGCATCATTCCTAGAAAATACAACAGCGAAACCGTTCTACTATTACCAGGCAAACTTTAAATGCTTCTTCTGTACTGAGATCTTCACAGAAGTCACCTCCGTTCTTCAGCATACAGACTCCCATCCAATTACAGACAGGTCGAGTTTATTACGCAACTATCTAAGAAAGGGAAAACGGGTTATTAAAGTCGATATATCCAATTTAAAATGCCGCATTTGTGACGAGAAATACTCGGATATTGACGAGATTCGGAAGCATCTAGCCGGCGCTCATAAAAAGGAATTTAATAGCGCCGGTAATGGTGTCATCGCGTATGACTTGCGGGTGAAAAATGGGCTTCTATCATGCCACAAAtgcaataaaacattcaacTCGTTCTTTCTACTGAACAGGCATATGAATGTTCACTTCAGTGTTGTATGCGAGACGTGCGGCCTAGGCTTCATGTCGCACCACAGACTACTAAGCCACAGAATTGTTCACCAGAACGGTGTCCACAGATGCGATAATTGTGAAGAAGTTTTCGCTACCAAATTGAAGTTGAGATACcatatgtttaaaaagcaCGAAATGAATACGAAACGAAGGAAGCCTCTGAAATGCCCGCATTGTTTGGAGAGGTTTGCTGAGCATTATCGGAAGATGACGCACTTGAAAGAGGTGCACGGAATAACTTTCACATTCGACTGCCAGTCCTGCAAAGCGGTGTTTCCGACGCGGCGAGCGTTGACGGAACACACGACCAAGCAACACACCCAGAAGATACAATGCAAAGTGTGTGGGAAGTGCTTTGGTACACAGTCGTTATTGAAGATGCATTCAAGGGGGCATACAGGCGAGAGGAATTTCTCATGTGGCATCTGTCAGAAGTCATACATGCACGAACGGACGCTACGTCAGCACATGCGGGTGCATGGGCCGGTTTGGAAGTTCACGTGTAGCGAGTGTGGGCACGGATTCCATGATGGAAacgattttaataaacacatgAAGCAGTGGCACCCGCAGGtgcCGGAATTCGAAGGACCAAAACCTAGTACAAGCGACGCTGACACGCAATTAATAGAAAGATTAAACGCGGCAACAATCATAGAGAACACCACAGTCAAACCATTTATATACCTCcaagcaaattttaaatgcttctacTGCAGTGAAGTTTTCCCGGAAGTGTCATCGGTGTTGCTACATTCAAGCTACCACACGCTTCCGGATCGGCCATCTTTGTTAAAAAACGACTATCTCAAACAGGGCAAACGCGTTATTAGAGTCGATATATCGGATTTGAAATGCCGTTTATGCGAGCAGAAGTTTAACGAATTGGAAGACGTAAGACACCATTTGGAAACCGAACACCAGAAAGAGTTTAAAGCAGCTGGTGACGGGCTAATGGCGTACGATTTGACGGCGAATAACGGTCTAATCGCCTGTTACAAATGCAAGGAAACATTCACATCCTTCCATCTTCTAAACCGACACATGAACGCGCATTCCAGCTTTGTCTGCGAAACATGTGGCGTGGGATTTGTGTCGCAACGCAGATTAATCAACCACACAATCGTACATCAAAACGGCACCCACAAATGTAAGCAATGCGACGAAGTGTTCTCAACCAAACTGAAGCTTAGGTATCACGTGATAACCAAGCATAATAAGACAGACAAACGCATAAGGAGGAAGTGTCCGCACTGTTTGGAACGCTTCACAGAACACTACCGGAAAATGACGCATTTGAGGGAGGCGCACGGGATAACGTTTTCCTTCGACTGCCGGTTTTGTAACGAAGTTTTCCCCACGAGGAAAGCGTTGACGAAACACACGACCCAGCATCATACGCAGAGAATCCAGTGCACGATTTGCGGCAAATGCTTCGGCACAAATACGCTGCTGAAACGGCATATGCGCGGCCATATTGGCGAGAGGAATTTCGTTTGTAACATCTGTCAGAAAGCGTATATGCACGAAAAGTCGCTTCGGCAGCACATGCACGTACATGGGCcgttatattga
- Protein Sequence
- MTVYERLNAASFLENTTAKPFYYYQANFKCFFCTEIFTEVTSVLQHTDSHPITDRSSLLRNYLRKGKRVIKVDISNLKCRICDEKYSDIDEIRKHLAGAHKKEFNSAGNGVIAYDLRVKNGLLSCHKCNKTFNSFFLLNRHMNVHFSVVCETCGLGFMSHHRLLSHRIVHQNGVHRCDNCEEVFATKLKLRYHMFKKHEMNTKRRKPLKCPHCLERFAEHYRKMTHLKEVHGITFTFDCQSCKAVFPTRRALTEHTTKQHTQKIQCKVCGKCFGTQSLLKMHSRGHTGERNFSCGICQKSYMHERTLRQHMRVHGPVWKFTCSECGHGFHDGNDFNKHMKQWHPQVPEFEGPKPSTSDADTQLIERLNAATIIENTTVKPFIYLQANFKCFYCSEVFPEVSSVLLHSSYHTLPDRPSLLKNDYLKQGKRVIRVDISDLKCRLCEQKFNELEDVRHHLETEHQKEFKAAGDGLMAYDLTANNGLIACYKCKETFTSFHLLNRHMNAHSSFVCETCGVGFVSQRRLINHTIVHQNGTHKCKQCDEVFSTKLKLRYHVITKHNKTDKRIRRKCPHCLERFTEHYRKMTHLREAHGITFSFDCRFCNEVFPTRKALTKHTTQHHTQRIQCTICGKCFGTNTLLKRHMRGHIGERNFVCNICQKAYMHEKSLRQHMHVHGPLY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01203436;
- 90% Identity
- iTF_01203436;
- 80% Identity
- -