Pmad014654.1
Basic Information
- Insect
- Pieris macdunnoughii
- Gene Symbol
- -
- Assembly
- GCA_905332375.1
- Location
- CAJOBZ010000066.1:1817140-1822854[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.47 29 5.3 0.9 1 23 56 78 56 78 0.95 2 19 0.0086 0.53 10.8 0.1 2 23 106 128 105 128 0.91 3 19 1.5e-05 0.00092 19.4 4.4 2 23 152 173 151 173 0.97 4 19 0.026 1.6 9.2 1.0 2 23 177 198 176 198 0.96 5 19 0.0026 0.16 12.4 3.3 1 23 203 226 203 226 0.96 6 19 1.8 1.1e+02 3.4 2.8 2 23 237 259 236 259 0.90 7 19 0.0083 0.51 10.8 0.7 1 23 265 288 265 288 0.94 8 19 6.8e-06 0.00042 20.5 1.9 2 23 293 314 292 314 0.96 9 19 2.9e-05 0.0018 18.5 2.6 1 23 320 342 320 342 0.98 10 19 0.00023 0.014 15.7 4.8 1 23 348 371 348 371 0.97 11 19 0.048 2.9 8.4 0.6 1 23 421 443 421 443 0.95 12 19 1.4 85 3.8 2.1 2 23 472 494 471 495 0.95 13 19 0.00014 0.0088 16.4 2.2 3 23 519 539 517 539 0.96 14 19 0.00075 0.046 14.1 0.1 1 23 542 564 542 564 0.97 15 19 0.00044 0.027 14.8 2.5 1 23 569 592 569 592 0.97 16 19 1.2 73 4.0 4.0 2 23 602 624 602 624 0.95 17 19 0.0032 0.2 12.1 3.0 1 23 630 652 630 653 0.93 18 19 1.8e-07 1.1e-05 25.4 2.0 2 23 658 679 657 679 0.97 19 19 0.00017 0.01 16.2 3.0 1 23 685 707 685 707 0.98
Sequence Information
- Coding Sequence
- atggATAACCactatttgaaaaataatattaactcaaTATCTTCACCAGAGGACTCCCCGACGCCACGCACAAGCATTTGGCAAATGACAGTTTATGAAAGGTTGAACGCGGCGTCATTCCTCGAAAACACAACCGCGAAACCGTTCTACTATTACCAGGCAAACTTCAAATGCTTCTTCTGCAGTGAGATCTTCACAGAAGTCACCTCCGTCCTTCAGCATACAGACTCTCATCCAATGACCGACAGGTCAAGTTTACTACGCAACTATCTACGAAAGGGAAAACGCGTTATAAAAGTAGATATATCCAATTTAAAATGCCGCATTTGTGACGAGAAATACTCAGATATTGACGAGATTCGAAAACATTTAGCTGGCGTTCATAATAGGGAATTTAACAGCGCCGGTAATGGCGTAATCGCTTATGACTTGCGGGTTAACAATGGGCTTCTATCCTGCCACAAATGCAATAAAACATTCAACTCCTTCTTTCTACTGAACAGGCATATGAATGTTCACTTCAGTGTAGTGTGCGAAACGTGCGGCCTAGGTTTCATGTCGCACCACAGACTAATAAGCCACAGAATCGTTCACCAAAACGGCGTCCACAGATGCGATAATTGTGAAGAAGTTTTCGCTACCAAATTGAAGTTGAGATATCATATGTTCAAAAAGCACGAAATGAACACGAAACGAAGGAAACCCCTCAAATGTCCGCATTGTTTGGAGAGGTTTGCAGAGCATTATCGGAAGATGACGCACTTGAAAGAGGTGCACGGCATAACATTCACATTCGACTGTCAGTCCTGCAAAGCGGTGTTTCCGACGCGGCGAGCGTTGACGGAACACACGACCAAGCAACACACACAAAAGATACAATGCAAAGTGTGTGGGAAGTGCTTTGGGACGCAGTCGTTATTGAAAATGCATTCAAGGGGGCATACTGGCGAGAGGAATTTCTCATGTGGCATCTGTCAGAAGTCATACATGCACGAACGGACGCTACGCCAGCATATGCGAGTCCATGGCCCGGTTTGGAAGTTCACGTGTAGCGAGTGTGGGCACGGATTTCATAATAGAAAcgattttaataaacacatGAAGCAGTGGCACCCGCAGACTGTTAAAAACTTTGtgcCGGAATTCGAAGGACCAAAACCTAGTACAAGCGACGCTGACACACAATTAATAGAAAGATTAAACGCGGCAACAATCATAGAGAACACCACAGTCAAACCATTTATATACCTCCAAGCAAATTTCAAATGCTTCTACTGCAGTGAAGTTTTCCCAGAAGTGTCATCAGTGTTGCAACATTCAAACTACCACACGCTTCCGGACCGGCCATCTTTGTTAAAAAACGACTATCTCAAACAAGGAAAACGCGTTATTAGAGTTGATATATCGGATTTAAAATGCCGTTTATGCGACCATAAGCTCAACGAATTGGAAGATGTAAGACAGCATTTGGAAACCGAACACCACAAAGAGTTTAAAGCAGCTGGCGACGGGCTAATGGCGTACGATTTGACGGCGAATAACGGGTTAATCGCCTGCTACAAATGCAAGGAAACTTTCACGTCTTTCCACCTTTTAAACAGACACATGAACGCGCATTCCAGCTTTGTCTGCGAAACGTGTGGCGTCGGATTTGTATCGCAACGCAGATTAATCAACCACACAATTGTACATCAAAACGGCACCCACAAATGCAAGCAATGCGACGAAGTGTTCCCAACCAAACTGAAACTTCGGTATCACGTGATAACCAAGCATAATAAGACAGATAAACGGATCAGACGAAAGTGCCCACACTGTTTGGAACGCTTCACAGAACACTACAGGAAAATGACGCATTTGAGGGAAGCGCACGGGATAACGTTTTCCTTCGACTGCCGGTTTTGTAGCGAAGTTTTCCCCACGCGGAAAGCGTTGACGAAGCACACGACACAGCACCATACGCAGAAAATCCAGTGCACGATTTGCGGCAAATGTTTCGGCACCAACACGCTGCTGAAACGGCATATGCGCGGACATATTGGCGAGAGGAATTTCGTGTGTGACATCTGTCAGAAGGCGTATATGCACGAAAAGTCGCTTCGGCAGCATATGCACGTACATGGGCCGTTATTTTAG
- Protein Sequence
- MDNHYLKNNINSISSPEDSPTPRTSIWQMTVYERLNAASFLENTTAKPFYYYQANFKCFFCSEIFTEVTSVLQHTDSHPMTDRSSLLRNYLRKGKRVIKVDISNLKCRICDEKYSDIDEIRKHLAGVHNREFNSAGNGVIAYDLRVNNGLLSCHKCNKTFNSFFLLNRHMNVHFSVVCETCGLGFMSHHRLISHRIVHQNGVHRCDNCEEVFATKLKLRYHMFKKHEMNTKRRKPLKCPHCLERFAEHYRKMTHLKEVHGITFTFDCQSCKAVFPTRRALTEHTTKQHTQKIQCKVCGKCFGTQSLLKMHSRGHTGERNFSCGICQKSYMHERTLRQHMRVHGPVWKFTCSECGHGFHNRNDFNKHMKQWHPQTVKNFVPEFEGPKPSTSDADTQLIERLNAATIIENTTVKPFIYLQANFKCFYCSEVFPEVSSVLQHSNYHTLPDRPSLLKNDYLKQGKRVIRVDISDLKCRLCDHKLNELEDVRQHLETEHHKEFKAAGDGLMAYDLTANNGLIACYKCKETFTSFHLLNRHMNAHSSFVCETCGVGFVSQRRLINHTIVHQNGTHKCKQCDEVFPTKLKLRYHVITKHNKTDKRIRRKCPHCLERFTEHYRKMTHLREAHGITFSFDCRFCSEVFPTRKALTKHTTQHHTQKIQCTICGKCFGTNTLLKRHMRGHIGERNFVCDICQKAYMHEKSLRQHMHVHGPLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01204255;
- 90% Identity
- iTF_01204255;
- 80% Identity
- -