Pman012952.1
Basic Information
- Insect
- Pieris mannii
- Gene Symbol
- -
- Assembly
- GCA_029001895.1
- Location
- CM054840.1:2319414-2320310[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-10 1.6e-07 31.5 0.0 1 33 18 50 18 55 0.97
Sequence Information
- Coding Sequence
- atgtttgtttttagaaTGTCCGGTTCACAATCAACCAAACGAAAAACCTGGGATGAAGAAAAAATGGCACAAGCTATAAAATTCGTCCGGGAAAAGAAAATGGGGTATTTGAAAGCGGCACAGCATTTTCAAGTGCCTAGGACAACTTTATTTGGTCTCTGCCAAAAAGATGAACAGTCTCCAGAAGTGGCAGCAGCTACTACATTAGGACGAAAAACTATCTTGGGCTCCGAACTTGAACATCAGCTAGTAGAATACATACTAATAATGGAGAGTAAGTTTCACGGTTTAACAAGAACTGATCTTCGCCGTATGGCGTTCATGCTAGCAAAGCGAAACAATTTGCAGAATCCCTTCGGTGAATCAGGTATGGCTGGAAAAAAGTggttaaagttatttttaaatcgtcaTAAAGATAAACTTTCGATAAGAAGACCAACTGGTACATCATTTGCCAGAGCATTTGGATTTGATAAAGAAAAAGTGGAAGCCTTTTTCAACCTCCTTGAAGAGCTTTACGCTAAGAATAACTATCCACCAAATCGTATTTACAACGTGGATGAATCAGGCCTCACAATAGTACAAAGTAAGATACCTCAAATCATCGGCCACAAAGGTAAACGCCAGGTAGCTGCACTGACTTCAGCAGAAAGAGGATCTTTGATGACAATAGTTGTTTGCATGAATGCTACTGGTCATTTTGTGCCACCGTTCATTATTTTTCCCAGAAAAAATATGAGTGCTCAGCTAATGAGAGGCTGTCCTCCAGGATCAGTCGGAGTTGCACACCCATCAGGGTGGATACAAATAAACATCTTTACAGACTGGTTCAAGCACTTTATTCAACACACCAACCCGACTCCTGAATCGAGGGTTTTACTAGATACTAGATACTAG
- Protein Sequence
- MFVFRMSGSQSTKRKTWDEEKMAQAIKFVREKKMGYLKAAQHFQVPRTTLFGLCQKDEQSPEVAAATTLGRKTILGSELEHQLVEYILIMESKFHGLTRTDLRRMAFMLAKRNNLQNPFGESGMAGKKWLKLFLNRHKDKLSIRRPTGTSFARAFGFDKEKVEAFFNLLEELYAKNNYPPNRIYNVDESGLTIVQSKIPQIIGHKGKRQVAALTSAERGSLMTIVVCMNATGHFVPPFIIFPRKNMSAQLMRGCPPGSVGVAHPSGWIQINIFTDWFKHFIQHTNPTPESRVLLDTRY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00822908;
- 90% Identity
- iTF_00420486;
- 80% Identity
- -