Pmad010939.1
Basic Information
- Insect
- Pieris macdunnoughii
- Gene Symbol
- PAXBP1
- Assembly
- GCA_905332375.1
- Location
- CAJOBZ010000034.1:1859580-1872128[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.2e-20 1.8e-16 60.5 0.9 3 190 498 661 496 684 0.80
Sequence Information
- Coding Sequence
- ATGTCTTTATTTCGTAAGCCTAAAAAGATTCAGCGACGCGTGTTTTGTGCCGATGATCAGGATGATAGCGATCCTGAGCCTCCACCGCCACCGACAATTAGTCAtaagaaagaaaataaaactgcGAAAGGCAAAACATTGTTAAGTTTCGCGGATGAAGaGGATGAAGGAGAGGTATTTAAGGTAAAGAAGTCATCACAAAGTAAGAGGTTAGCAAAGCGCAGGGAAAAAGAAAAGCGTACTCAACCTGATGATGAAATTCACAAAGTTGAAAATAATGGCATTGAgGAAAATCAAGCAGAGGAGAAagatattattaagaaaaagaagaaagtaTCCCTTGAAGGGATGATTCTGTCTGGAAGAGAGGCACTAGCTGCAGATGGGGCTGGAGATATTTCAGACGAAAGTGGCAATGAAGATGAGGATAGTAGGGGTTTCCACCAGTTCCGCGCGGAAACAGTCCGAGCGGCGCTGGCTGGTGCGGGACATATTCCCGATGCCGCACTCATCCATGCGGCCCGCAAGACGCGACAGCAGGCTCGTGAACTTGGTGATTACATCCCAATCAAGTCTGATACTCCGTCTGGCTCTCGATTGATTCATGaggatgatgatgatgatgaagaaGAAGGCAGAATTCAAGTCAGAGGGTTGGAGTTGCCTAGTGATAAACCAAAACGTGGAACAGCAACATTATCGGATGAAGAGCTGAACAGTGAAGCTGAAGAATGGGAGGAACAACAGATGCAGAAAGCGGTGCCCTCTATTGTTGATATCACTGgTGAAACTGAGTTGAATCCTTTTGCTGTGGCCCCCCTGCCTGCAAGACTTGAGGCTCCGCAGCACTTAAGGGCCCTCGGGACTCCAGCCGGGCCCCCGCCCACCACAGCACAGGAATTGGTACTTGCTCTACAAAAAAGGTTATCTGAGCTGCAAACAGATCGCCAAGAAACGATAAACAAAAGACAGACTTGCCAGGAAAGATTATTAACCTCTGCCCGGGTGAGGGAATCCCGCTCTGCCCGATGCCAGGACTTAGATGCTGCATACAAACGGGCACAGGCTGTTCGAGGCTATCTCACTGACCTCATCGAGTGTCTGGATGAAAAGATGCCCCAACTTGAAGCTCTGGAAGCCCGCGCTCTGATGCTTCACAAGCGTCGCTGCGAATTCCTCATCGAAAGGCGTAGAGCTGACGTGAGAGATCAGGCGCAAGATGTTCTGGCTTTAGTCGctCGACCAGGCTCCATAAAGCCTCCAGATTCTGAAGAAAAACGTCGTCGCTGTGCCGAGCGTGAAGGTCGTCGGCGCGCGCGCAGATTGAAGAGAGAAGCCGCTTCCACATCACATCTGCACCGGGACGGTGACTCCAGTGATGATGAACTGCCTCCCAAGGAGGTTTTACACGTTCAGCATGAGACCGATGCAATTCGTCAGTTGTCGTCGTCGTTATTCGCtgatgcgttgccggcatgGCGTAGTATACGGGGTATTTGCGCCAAGATGGCGAGATGGAGACGGAAACACAGCACCCTGTATAGCGATGCCTATATCGCTGACTGCTTGCCGAGGCTCTTAGCGCCTTATGTGAGGCATCAGctCGTAATGTGGAATCCGCTGGCGGATGAAGATAATGAAGATTACGAAAAAATGGACTGGTATAAaTGCCTCATGATGTACGGAGTACGATCTGAAAAGCTTTCAGACGATTCTGAGTCTTCAGAGGATGATATGACTCCCCAATTGAGTGAAGAAACGGTGAGGGATGATGTGGATCTGATGCTGGTACCCACCATACTTGATAAGGTCGTACTGCCCAAGATTGCAGAGATTGTCGAGAACGCCTGGGACCCGATGTCTGTTCGTGCGTGTATTCGTCTACGCAATATTCTGGTGCGAGCTGCGACTCTTCCTGCCAGGTCTTCTCTAGAGAAGCTCTCTGCGGCCGTTAACTCGCGACTTTCTTCATCGTTGGCAGCTGATGTTTTTCTACCTCCGGCACCTCAatTAGCGGATAACGCTGGAAGTCAGTTTTGGAAGCGATGCTTAGGCGCTGGAGTCCGATTACTGCGAGCCTCGCTTTGTCTTTGCGCACCGCCTGACATTCTTAGCGGAGATCATTTGGCACTATCACTAATTGAGACGCTTTGCTGCGCGGCGGGAGCAGCACCCGGACCGCAGATGAGTGCGGCGGCTGCGGCTCTCGCGAATACGCTGCCTCGTACGGGACCCCTTGAGGACTACGGCTCTCAACAGGCTGGCCAAGTTGGCGCACCTCGCCCTGACGAGGCTGCAGTCTGA
- Protein Sequence
- MSLFRKPKKIQRRVFCADDQDDSDPEPPPPPTISHKKENKTAKGKTLLSFADEEDEGEVFKVKKSSQSKRLAKRREKEKRTQPDDEIHKVENNGIEENQAEEKDIIKKKKKVSLEGMILSGREALAADGAGDISDESGNEDEDSRGFHQFRAETVRAALAGAGHIPDAALIHAARKTRQQARELGDYIPIKSDTPSGSRLIHEDDDDDEEEGRIQVRGLELPSDKPKRGTATLSDEELNSEAEEWEEQQMQKAVPSIVDITGETELNPFAVAPLPARLEAPQHLRALGTPAGPPPTTAQELVLALQKRLSELQTDRQETINKRQTCQERLLTSARVRESRSARCQDLDAAYKRAQAVRGYLTDLIECLDEKMPQLEALEARALMLHKRRCEFLIERRRADVRDQAQDVLALVARPGSIKPPDSEEKRRRCAEREGRRRARRLKREAASTSHLHRDGDSSDDELPPKEVLHVQHETDAIRQLSSSLFADALPAWRSIRGICAKMARWRRKHSTLYSDAYIADCLPRLLAPYVRHQLVMWNPLADEDNEDYEKMDWYKCLMMYGVRSEKLSDDSESSEDDMTPQLSEETVRDDVDLMLVPTILDKVVLPKIAEIVENAWDPMSVRACIRLRNILVRAATLPARSSLEKLSAAVNSRLSSSLAADVFLPPAPQLADNAGSQFWKRCLGAGVRLLRASLCLCAPPDILSGDHLALSLIETLCCAAGAAPGPQMSAAAAALANTLPRTGPLEDYGSQQAGQVGAPRPDEAAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00878865;
- 90% Identity
- iTF_00878865;
- 80% Identity
- -