Pmad016616.1
Basic Information
- Insect
- Pieris macdunnoughii
- Gene Symbol
- -
- Assembly
- GCA_905332375.1
- Location
- CAJOBZ010000105.1:168-2189[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.9e-12 1.9e-09 37.0 0.0 2 37 16 51 15 57 0.93
Sequence Information
- Coding Sequence
- ATGGTTCGCACGTACAAAAGAAAAACTGATGCCGGAGAATGGTCTCAAGAAAAAATGAACGAGGCTGTTAATAAAGTCCAGAACAAAAAGTTGACCATACGACAAGCAGCTAAGACTTTTGCAGTACCGTTCACGAGCTTACAGAGGAGAGTTACTCTATCCAGGGGTACTATTAAGCGTCGAGGTGGACAACCAGCTTTAGATGAGAATGCTGAAAAGAGGTTTGCTGACCGCCTATTGCACTTGGCAAGTCGTGGCTTCGGTATTACACCCAAAGCGGTACGTAAGTACGCGTTCGAATTTGCAGAACGACAAAACGTACAACACAAATTTGATAGAAGTGCTGGAATGGCTGGTCAGGACTGGTTTCATCGCTTcttacaaagaaataaaaacatatctaTTCGGAAGCCGGAAGGTCTCTCAAGAGCAAGGATTAATGGTATGAAGGAGGAAAAAGTGACAGAATTCTTTAATACTTTGAAAACAGTAGTAGATAACAACAATTTAAGAGGAAGACCTGAATGTGTATACAATGTTGATGAAACGGGGATGCCGCTTAATAACCGCCCACCCAACATTATAGCCCAAAAAGGTGCTAGAGATGTTGTCAGCATGACCAGTGTTGAACGAGGTGAAAATGTAACAGTTCTAGCCTGTATGAATGCAGCAGGACAGTACATACCTCCATTTGTTCTATTCAAAGGTGTGCgtaaacgtgacgattttctGTTAGGTATGCCACCGGGTACTGAAGTTGCCATGACAGAAAAGGGCTGGGTCACCGAAGAAGCGTTTAAGTTGTGGCTGCAACATTTCAATCGCTACCGGACCTCAGGAAAAGTAGTTCTAATTTTGGATGGACATGCATCACACACCAGCTATTCAGTGGTAGACTTGTGTGACTCTTTTGAAATTGAACTTTTACTTCTTCCTCCACACACATCACATGCCTTGCAACCACTCGATGTATCGTTTTTCAAACCGCTCAAAACCTATTATCACCAACAAGCTACAGCATGGCAACATTCACATCCGTATCAAGGAATCACAAAAGTCGCTTTTGGAGCACTTTTCCAACGGGCTTGGAATCAGGCTGCTTCTGTTGGGAATGCTACAAAAGGCTTCGAAAAGACTGGAATATTTCCACTAAACGCCAATGCAATACCTGACTACAAGTTAATCGGTGATATAGAGTCGGATATTGTAGAGTCCCAAGTCCAGTCCCCAAGTTCCCAACAAATGCAAGCCACAAATACACAACCACAAGCTGATACATTGTCATCTGCAAGTTCACGACAGTCTGATAAAGCCCAGTCTTCCACCTGTGCAGATCAAGACAGAAAGAAGATGAAGAATAAAGCAACGCCTGGGATAAAAATTAAGAGTTCATCAGCAAAACAGAGAGAGTGTCAAGTGCCCCAAGTCCAATCCACGAGTTCCCAACAGGTGCAGCCACAAGACCAATCCTCAAGTGCAGAACAAGTGCAGTCAAAAATAGAGGTCCAAGTCCAAGGCACAAATACAAAACCACTTGATGATATAGTGCCATCCACAAGCTCGCAACAATCTGACGAAGTCCAGCCTCACACCTGTGGAGaagtaattaaagaaattctcCCATCACCTTTAAAGTCACCAATTGCTTCTAAGAGGATTCGTAAAGTTTCAAAACTGGTCTTGCATTTAACATCACCTCAGAATAAGACTACTCTTCTCGAAAAAGAAACAAAGAAGAAATTTAAGATAGAGAATAATGCCAAGGAAAATAAGAAAAAGGCTGTGGGCAAAGAAAATACTATGAAGAAGATGAAGAATGAAGCAAAGCCTGCGATAAAAATTAAGAGTTCATGTGCAAAACAGAGAGAGTGGCACTGCATTTACTGTTCCGAAATATTCGTTCATCCACCATCAGAGGATTGGATTCAGTGCAATGCTTGCGAAGAATGGTGCCACGAAAAATGTGCATATagggggggggagaaagggCCATATATATGTGATTTATGTGGCAATCATTAA
- Protein Sequence
- MVRTYKRKTDAGEWSQEKMNEAVNKVQNKKLTIRQAAKTFAVPFTSLQRRVTLSRGTIKRRGGQPALDENAEKRFADRLLHLASRGFGITPKAVRKYAFEFAERQNVQHKFDRSAGMAGQDWFHRFLQRNKNISIRKPEGLSRARINGMKEEKVTEFFNTLKTVVDNNNLRGRPECVYNVDETGMPLNNRPPNIIAQKGARDVVSMTSVERGENVTVLACMNAAGQYIPPFVLFKGVRKRDDFLLGMPPGTEVAMTEKGWVTEEAFKLWLQHFNRYRTSGKVVLILDGHASHTSYSVVDLCDSFEIELLLLPPHTSHALQPLDVSFFKPLKTYYHQQATAWQHSHPYQGITKVAFGALFQRAWNQAASVGNATKGFEKTGIFPLNANAIPDYKLIGDIESDIVESQVQSPSSQQMQATNTQPQADTLSSASSRQSDKAQSSTCADQDRKKMKNKATPGIKIKSSSAKQRECQVPQVQSTSSQQVQPQDQSSSAEQVQSKIEVQVQGTNTKPLDDIVPSTSSQQSDEVQPHTCGEVIKEILPSPLKSPIASKRIRKVSKLVLHLTSPQNKTTLLEKETKKKFKIENNAKENKKKAVGKENTMKKMKNEAKPAIKIKSSCAKQREWHCIYCSEIFVHPPSEDWIQCNACEEWCHEKCAYRGGEKGPYICDLCGNH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01178365;
- 90% Identity
- iTF_01204813; iTF_01204814;
- 80% Identity
- -