Pbra017838.1
Basic Information
- Insect
- Pieris brassicae
- Gene Symbol
- lolal
- Assembly
- GCA_905147105.1
- Location
- LR989943.1:8040888-8043394[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8e-16 8.4e-13 48.1 0.0 3 42 328 368 327 371 0.94
Sequence Information
- Coding Sequence
- ATGTCACAACAATACAGTTTGCGTTGGAATAACCATCAACCTAACTTTATTTCAATGTTTACAACACTTCTGAATACAAAAACATTAGTTGATGTTACCTTGGCAGCAGAAGGGCAGCATTTACAGGCTCACAAAGTTGTACTTTCAGCATGTAGTACATATTTTCAGGCACTCTTTGTAGATAACCCATCGAGACATCCTATTGTCATTCTAAAAGATGTTACATTTTCTAATCTTCGTACAATGGTAGATTTCATGTACTATGGAGAAGTTAATGTTACTGAAGAACAGTTACCCCAGGTGCTTGATACAGCCAAAGTTCTAAAAATCAAAGGCTTGACAGAAATGCCAGACTCTACTTCTCTGACTAGGCAGAACATGACATCTGAATTTCAATCATCTGGAGAAGTTGAGTCACTCAGACCCTCAGCATCCCCTTCATCATCACCTTACAATAAAAAACGACGCCGCAGAAAGAGTTCTACGGGTTCAATCGGAGTAGGAAGCCTAGTGCTTGATGACACTAAGCACGAAGATTTTGGACAGAATTCACAAGATATTGTGCGTGCAGAAACCATTACATTGAGTAGTCTTCCGCAACAGAGACGGATGCGGGAATATGATGAACGATTAGAAGTTATGGAAACTACTGATGAACCACATAACCTGAATGTCGACCCTATGTCCATTGACGACTCAGTTGGCATTGCCCCAGGGGGACAGTGGAGCATGATTGAACATCCTTATCCACGGTACTCAAATGCCTGTATCGGAGGTGGATCCCTACAACCAGATCCGGGAATGTACATGAATAACGTAATGAACTCTCACAATGACCACGATATATCCGATTATGGCCAGAATTTGGGAGTAGCCGGTCCGTCTCCCGGCCCGAGTTGTGCCACTGAAGCCCCAACAGCTCACGAAATGCCAAATCTGACGCAACAGAAGAGGCGGCGCACGACCAATCCACAAGCGGCTGAGAACTTTCAACGCGCTTTGGAGGCAGTGCGGTTTGGTGGAATAGGATTCTGTAAAGCTGCCCGTTTGTTTGGTGTGAATAACAGGACATTGTGGTTAGAGTACAAAAAGAAGGGATATCCGAATAACAGGCCGAGTATCAAGAGTAGGATAAAGCGAGAACATTCATCACCGCCATTGCAAACGAAAGAAGAAATCCCCCAACAAGATCAACAAATGGCGCTCTTATGTCCGCCGCACCCGGTGCCTGTGGGCTTTATTGACCCACGGCCGTTAGACTTCCAGGTGCAAGTAAACAACCAGAACCTAAACGTAAACGTTAATTATCTTCAATAG
- Protein Sequence
- MSQQYSLRWNNHQPNFISMFTTLLNTKTLVDVTLAAEGQHLQAHKVVLSACSTYFQALFVDNPSRHPIVILKDVTFSNLRTMVDFMYYGEVNVTEEQLPQVLDTAKVLKIKGLTEMPDSTSLTRQNMTSEFQSSGEVESLRPSASPSSSPYNKKRRRRKSSTGSIGVGSLVLDDTKHEDFGQNSQDIVRAETITLSSLPQQRRMREYDERLEVMETTDEPHNLNVDPMSIDDSVGIAPGGQWSMIEHPYPRYSNACIGGGSLQPDPGMYMNNVMNSHNDHDISDYGQNLGVAGPSPGPSCATEAPTAHEMPNLTQQKRRRTTNPQAAENFQRALEAVRFGGIGFCKAARLFGVNNRTLWLEYKKKGYPNNRPSIKSRIKREHSSPPLQTKEEIPQQDQQMALLCPPHPVPVGFIDPRPLDFQVQVNNQNLNVNVNYLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01203175;
- 90% Identity
- iTF_01203175;
- 80% Identity
- iTF_01202578;