Pmel022511.3
Basic Information
- Insect
- Phyto melanocephala
- Gene Symbol
- hang
- Assembly
- GCA_941918875.1
- Location
- CALNXE010003644.1:25418-54078[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.17 14 7.0 0.9 3 23 474 495 473 495 0.92 2 18 0.27 22 6.4 5.1 2 22 597 617 596 617 0.94 3 18 0.05 4.1 8.7 1.1 1 22 692 713 692 715 0.90 4 18 0.0016 0.13 13.4 0.2 3 23 834 855 833 855 0.96 5 18 7.7e-05 0.0063 17.5 0.3 1 23 863 886 863 886 0.94 6 18 0.00047 0.038 15.1 0.1 2 23 977 998 977 998 0.97 7 18 0.0013 0.11 13.6 2.7 2 23 1045 1067 1044 1067 0.95 8 18 0.0055 0.45 11.7 0.2 2 23 1076 1098 1075 1098 0.95 9 18 0.0038 0.31 12.2 0.1 1 23 1111 1134 1111 1134 0.95 10 18 0.0017 0.14 13.3 1.1 1 23 1192 1214 1192 1214 0.99 11 18 0.0026 0.21 12.7 0.9 1 23 1222 1245 1222 1245 0.96 12 18 0.038 3.1 9.0 0.1 2 20 1253 1271 1252 1271 0.95 13 18 4.6e-05 0.0038 18.2 0.2 3 23 1337 1357 1336 1357 0.98 14 18 0.00017 0.014 16.4 0.6 1 23 1392 1414 1392 1414 0.97 15 18 0.00054 0.044 14.9 0.7 2 23 1497 1519 1496 1519 0.91 16 18 0.79 64 4.9 0.1 3 19 1540 1556 1539 1558 0.93 17 18 0.14 12 7.2 0.9 3 23 1574 1594 1574 1594 0.97 18 18 0.00058 0.047 14.8 0.8 1 23 1852 1874 1852 1874 0.98
Sequence Information
- Coding Sequence
- ATGTCGGATGAGCAACGACACCAAATACAGCAACAACAAAACCAGTCATCACAGCAGCTGCAGAGGAAACATAATTGTTGTCGCCTTTGTTTAGCTCCTGACAATGAATGTATATCAATTTTAAATAGCTATGCAGCCGACAAGGAACCCTTAGCAACTAAAATTCAAGCTTGTGTAGATGTTAAGATTTCCAGTTATGATAACTTATCCTTGCGTATATGTCACGCTTGCATAAGTTACCTAAACTCTTGGCAATCGTTTAAGAATCGCTGTTTAACAGCACAGGCAAAACAACGTTCCTGGCTGGAAAAAACATCAAATAAATCAATACAATCTGCTACTGATCATCATTACCAATCAGCTGATAATCAATATGATGAACTACAACATCACCAGTCGCATCAGCAGCAACATCATCAACAACAACAGGATGAACAACAATCATTGGCTTCTTCCATATTGGAGGGAATTTCAACGTTAAAAAAACGCAAATCTTTAACAGTCTATGTGAGTCCTAAATCGCAACAAACTAAACAACAACAAGAAAAATTATTACAAAAACAACAACTAAATATCGCAATGCCGTTAACTAAACGTCACTATACTAAACATAAATACAATACGTCTCAGCGACAAACGCAAAGTCAAACAACGCATACTGCGACTACCACAACACATCATGTACAAGCGTCGTCGTTGTCCTTATCATCCTCTAGTAAAACTAAACAAAAATTGGAAAAAAAACAGATGATGGTCAACCGGCAGCCTTTATTAGCTTCTTCTTCTCCTATACAACAACAGTCATTTGTTATGCCAGCAGTTCCTAATGTAACTGCTAACGTAACTTCATGTATGATTACTGCGCCAACCGTTACTAGCATCACAACGGCAACAACTTCAGTTATAGATAAATCGCCTAACACAATACTAACTACTACTACTACAGCAAACGTAGTAGCTAGTGGCAGCTGTAGTATTGCCATGACTTCAACAGCATCTGCTGCTGTTGTTGCTCCTAGTACACTTGTTAGTGCAGGTTTACTTTTTCGGGCTGGTTCTAATGATGAATGTTTAATAGGGGAATCAGTTGCATCCTCATCGTCGGCCGCTTGTACAAGTGCTGTTCAACAATTGCGTTTGTTTAGACGATACTCTTATAATCCGTTACCTGCAGTACAAATAAAAAGCGAACCAATTGAGGCTGAGGATGATTATCATGGATCTAAACAACATCAGCAACAACATGATGAATCCGATGAGATGGTAGTAGATCCTACCTTGTTTTTAGAGCGTACCGCCGATGAGGGTGATTACATGGAATCCACTTCAAATTACGATTATGAAGTGGTGAGGCCACCCGCAGAATTAAAACCATTACCATCTAGTACTACCATTCGTATGAGCACTAAAGAGGCAGCTTGTAGAGCTTGTAATTTAAAATTTTCAACGCGCGCCAATGCTAGACGCCATGAAAAGAACCTACATCCTAATCTGTTTGAGACTCTGGAGGAGAACGATCAGTCAATTAATAAACAAACCGCTGCTTTAAATGCCTCCTTGGAATTGCAAAGAGCTGTAGCAGCCGCTGTGGCAGCCGATGCTTGCAAACTATCTAGTGGCGCTGTAATAACACCACAAAAATATCGCCAAGAAGTTGTAAATGCTTTTAATAATAGTGAATTTGGTTTTGATTATGATAATCCAGAAAAATATCGTGAACTCTTGACGGATGAGAAAATTGTTTTCCTACAACAGAACGATGAATTCCTAAGACAATACCAAAATATGACTTGTCATTGTTGCAACAAATATTATACAACCTATAAGAATTTCATGGCTCATATGCGTAAAAAGTACCTAACACTACCCAGAAATTGTTGTTTTAACTGCCTAAAATTAAACGATTCGAAGGCATTATTTATATCACACTTAAAGAAGCGTAACTGTATAAATTTGCACAAAGTCCTGCAAAATTTAATGTCCAAAAATGCTAACTTTGCGGCTGCAGTTACTGCAACAGTAGCGGCGGCTCCTGATAAGGTTCGAGCCAAAGAATTGTTGGTGAATAAAATGTACGAGTGTAAGCTGTGTTCGAAAATTTTCCGTTTAAAATTAGAATTTCGTTCGCATGTCTATGACGAACATGCCGATGTACAACGCAAAGATGTTAGCAATACCCAGTGTTGCTATTGTGCTGTTGACATTGAAGATCCAGCCGATCGTAAACGTCACTACAATAATATGGATTGTATTGTTACTTTCCGTTGTGTTACTTGCGATACGAAACATGAAACTCAACAGAAGTTTATGGAACATGTGCAGGAGAAACATTTAGCCAATTTTGGCGAGCAGTCAAAACCTTTATTAGGTGCTGACAATTCGTCGAGTAAAATTATGGGAGGAGCTTCTTCAGCCGACGATTCACGCAGTAGTCAGTTTAATGTGTCGCTTATAAATACCACTCCTAAGACACAGTATTTTTCACGTATGCCTCAGGCATGTCCGATTTGTGGCCAGCAGTACAACAACTACAACAATGTATTGCGACATATGGAATCTAAACATCCAGACCAGTTGCCACAAACCTATAAATGTGTTAAATGTGGCCAAGGTTATCCTAGGCTATCAAATTTGCGTGAACATATGGTCAATACACATGGTGCCGACAAAGCACGCCATACCGGATTTGAGTATATCGTAAATGCAGATGCTGTCAAAAATGCTGCCGGATCATCTTCTTCGTCGAAAAATCCCTACACAGGGCGTTATGATTATGTGATGAAGGATTTAATGTCTATAACAAATGGTGGGACAGTTGTTGACAATGATTCTGAAAGAGAAAATGTGGCCAAGAAAATGCGCGTGGAAACGAACATTTCAAATAATAATAATAATAATACTGGTACAGTAAGTAATGCTGGTCCTCGAGAATGCTCCATCTGTAGTGCTGTATTTGCCAATAATATTGGTCTTTCGAATCATATGCGTTCTCATCAAAGTGCCCAAAATAATAATTATGGCATTTTATCTTCAAAGACGGCTGCAGGCAGTAATGTTGGCACAACAACCGGTCAACAGCAAATATTGAGAAAATCTTTGGAGCAAGCAGCCGATAGACGTTTCCGACGCATGCGTTGTCGAATTTGTCAACGACGTTTCTCTTCAAAGAAATCTTATCGTTATCATATGCTCAATGATCATCAAATTCGCAATGTGCAGTTTATAAAGTGTAAATTGTGCGATGCCGAATTTGCGTACGAAAAGGGTTTGAAGGTGCACATGTTTAAGATACACAATACCCTATTAAAGGATGATATGATTATAAAACAATATGAATGTGAAATTTGTTCTATAGTTTATCGCACTGATGTGGAATTGCAACACCATTTGGCCAATGTACATAATAAACAAGGGGAACCAACAAATATGGATGATGATGAGGCCTACAATGCGGATGAGTCTTTGGCGGGTGGTGTTGTTGACAATGGTTCAGCGGGTGCTGATGTGTCGGGTGTATCGACACCTGTAAGTGGTATGGGCTTGGGAGACACTCAAGCTGGTCCTTTATACTGGTATCAATGCAAGTATTGTGCGTCCAACTTTAATACAAACAAAAAATTGGCCATACATATTAACTCGCACGATGAATTCGATTCTAATGATTACTCTTGCAAGGATTGTGGTAATGTTTATAGCGGGCGTAAAAGCTTATGGGTTCATCGCTATAAGAAACATCCACAGATACCCGAACCCTCGGAGTGTGTCATGTGCAAGAAAGTTTTCTTTGATGCACAAATGTTAGAAAACCATATACCCTCGTGTAATCGCAAACCTATTACCCAATTGGCCAGTGACACTGCTACCGCCAAATACAAACATAAAACTGGAGACGATGAGGATGACGAAGACGATGAACAATCACGTGATGCCGACAGCAGTTTAGTAACGTCCATTAATGCCACTGTGGGTAGCGCCAGTAATTTAAAAATAAAGTTACCCGAAGTTGCTTGCACAATTTGTGGTGCTCGTTTTACCGATCAGGATCTGTTCGCTAAGCATATACAGAAGCATGAAATGGAATTGTATACTGACAATCCGTTGGCGGCAATGTTCGATACTGGACCTGCCGATCCAAATCAATTCTATATGGATCGAATCAATGATAACGGCGAGTATGCATGCGACTTGTGTTCAAAGACATTTTCACAAATGACAGCACTAAAAGTGCATAGGAAATGGCATTTCAGAGGTGATAGCAAACAGAACGAAGCCGATCAACATATGCCGAGCAACAGCAATATTCAACATTCGCAACAGCAACAAAACAAAAGCCAACAACAAATGCAACAGCAACAACAGCAGAAGTCAAAATCCAAGATGCCGATCGACCATCAACATCTACTGGGATTACAAGCAGTGGGTCTAATGCCGCGTCAATTTGCCAATATGGGCGGCAATCACAGAGCCCAGAAACGTAAACGTGAACTTCGATGTCAATACTGTCCCTCTACATTCATCAGCAACAATAATTTGCGACGTCATCTGTACGAGTTGCACAAAAACGAAATGGGTCATTTACCCGAACCACCGAGAATTGAATGTGATGCACCAAATATGTGTCGAAAGTGTAATATTAAATTCGAAACAAAAGCAGAATGGATTGAACATAAAGTGGCGGAGGCCAGGATTATGAGACCATATGGACCATTTCAATGGGGCTGTGATTTATGCGGTGCATATGTTTCGCGCAAGGAAAAATTAATAAATCACTTGCACAATCATATGAAAGAACAAATAATAGTTCCGATCGAACATCCAGAGCCCAAAAAACCACAGCAAACACAGACAAATTCAGAACATCTACAACAGCAACAGACTGCTCAAATCCCTAATAAACAACAGCGTTCGCAGCAGGACACCATGGCAAATGATATTATGCCAGAGTTCAAAAAGATTAAAATACCTCTACTGCCCGCGAAACAGGAAGCTGATGAAGAAGAAGAGTCAAGGGACAGTGTTAAAGATCAATATgatgaagatgacgaggatgacgatgatgagagagaggatggtggtgacggtgaagaagaagctgaagttgaaagtagtgatagacctgaagttgagcaacaacaacaacgacgacctgcagttgaagaatttgatgaggaagatgaggaagaggaaccagtcgaaggtgaggagtttgatgatttagcggttggagctcagcagacggttggcggtgatgaagatgtcgacgaggacgatgatgatgacgatgacgatgataacgacgatgatgacagtagtgatgccgatgatgaagatccaacgaccaacgaagaCACCAATGAGGCGTCTAGTCTTAAAGGTAAAAATACAGATGCAACACAAACCCGCAGATACAATGAAAACGAAGTCGATGAGAACGACGACGTGGAAGAAGATGATTCCGATGAATATGAAGACGACGAAGATGATAATTCCTCAACTGACAATCGCAAGCCATCTTTATCATCAGTGGTCGGTAATGTTGGGCCAAAATCTCGCTATTCCTGCGATCTATGTCAGGTGTATTTCGATACACAACAAGAATTGCAAAAACACGTTAAAATGCATTTCCTAAACGGTCCTGGCTCGGTGACATTAACGGAGATTAAGTCCTTATCAAAATCATCATCCAACAAAAGTCGCAGCAGCAGTAGTGATGTTGTAGCTGTATAG
- Protein Sequence
- MSDEQRHQIQQQQNQSSQQLQRKHNCCRLCLAPDNECISILNSYAADKEPLATKIQACVDVKISSYDNLSLRICHACISYLNSWQSFKNRCLTAQAKQRSWLEKTSNKSIQSATDHHYQSADNQYDELQHHQSHQQQHHQQQQDEQQSLASSILEGISTLKKRKSLTVYVSPKSQQTKQQQEKLLQKQQLNIAMPLTKRHYTKHKYNTSQRQTQSQTTHTATTTTHHVQASSLSLSSSSKTKQKLEKKQMMVNRQPLLASSSPIQQQSFVMPAVPNVTANVTSCMITAPTVTSITTATTSVIDKSPNTILTTTTTANVVASGSCSIAMTSTASAAVVAPSTLVSAGLLFRAGSNDECLIGESVASSSSAACTSAVQQLRLFRRYSYNPLPAVQIKSEPIEAEDDYHGSKQHQQQHDESDEMVVDPTLFLERTADEGDYMESTSNYDYEVVRPPAELKPLPSSTTIRMSTKEAACRACNLKFSTRANARRHEKNLHPNLFETLEENDQSINKQTAALNASLELQRAVAAAVAADACKLSSGAVITPQKYRQEVVNAFNNSEFGFDYDNPEKYRELLTDEKIVFLQQNDEFLRQYQNMTCHCCNKYYTTYKNFMAHMRKKYLTLPRNCCFNCLKLNDSKALFISHLKKRNCINLHKVLQNLMSKNANFAAAVTATVAAAPDKVRAKELLVNKMYECKLCSKIFRLKLEFRSHVYDEHADVQRKDVSNTQCCYCAVDIEDPADRKRHYNNMDCIVTFRCVTCDTKHETQQKFMEHVQEKHLANFGEQSKPLLGADNSSSKIMGGASSADDSRSSQFNVSLINTTPKTQYFSRMPQACPICGQQYNNYNNVLRHMESKHPDQLPQTYKCVKCGQGYPRLSNLREHMVNTHGADKARHTGFEYIVNADAVKNAAGSSSSSKNPYTGRYDYVMKDLMSITNGGTVVDNDSERENVAKKMRVETNISNNNNNNTGTVSNAGPRECSICSAVFANNIGLSNHMRSHQSAQNNNYGILSSKTAAGSNVGTTTGQQQILRKSLEQAADRRFRRMRCRICQRRFSSKKSYRYHMLNDHQIRNVQFIKCKLCDAEFAYEKGLKVHMFKIHNTLLKDDMIIKQYECEICSIVYRTDVELQHHLANVHNKQGEPTNMDDDEAYNADESLAGGVVDNGSAGADVSGVSTPVSGMGLGDTQAGPLYWYQCKYCASNFNTNKKLAIHINSHDEFDSNDYSCKDCGNVYSGRKSLWVHRYKKHPQIPEPSECVMCKKVFFDAQMLENHIPSCNRKPITQLASDTATAKYKHKTGDDEDDEDDEQSRDADSSLVTSINATVGSASNLKIKLPEVACTICGARFTDQDLFAKHIQKHEMELYTDNPLAAMFDTGPADPNQFYMDRINDNGEYACDLCSKTFSQMTALKVHRKWHFRGDSKQNEADQHMPSNSNIQHSQQQQNKSQQQMQQQQQQKSKSKMPIDHQHLLGLQAVGLMPRQFANMGGNHRAQKRKRELRCQYCPSTFISNNNLRRHLYELHKNEMGHLPEPPRIECDAPNMCRKCNIKFETKAEWIEHKVAEARIMRPYGPFQWGCDLCGAYVSRKEKLINHLHNHMKEQIIVPIEHPEPKKPQQTQTNSEHLQQQQTAQIPNKQQRSQQDTMANDIMPEFKKIKIPLLPAKQEADEEEESRDSVKDQYDEDDEDDDDEREDGGDGEEEAEVESSDRPEVEQQQQRRPAVEEFDEEDEEEEPVEGEEFDDLAVGAQQTVGGDEDVDEDDDDDDDDDNDDDDSSDADDEDPTTNEDTNEASSLKGKNTDATQTRRYNENEVDENDDVEEDDSDEYEDDEDDNSSTDNRKPSLSSVVGNVGPKSRYSCDLCQVYFDTQQELQKHVKMHFLNGPGSVTLTEIKSLSKSSSNKSRSSSSDVVAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01162427;
- 90% Identity
- -
- 80% Identity
- -