Basic Information

Insect: Phyto melanocephala
Gene Symbol: -
Assembly: GCA_941918875.1
Location: CALNXE010002424.1:142413-147398[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00037 0.03 15.4 3.7 3 23 102 123 101 123 0.97

2 14 0.002 0.16 13.1 0.2 1 23 130 153 130 153 0.94

3 14 2.6e-05 0.0022 19.0 0.0 1 23 158 180 158 180 0.98

4 14 0.0052 0.42 11.8 2.4 1 23 186 209 186 209 0.92

5 14 4.4e-06 0.00036 21.4 2.0 1 23 215 237 215 237 0.99

6 14 5.1e-05 0.0041 18.1 3.7 3 23 245 265 244 265 0.97

7 14 0.0093 0.76 11.0 1.6 1 23 271 294 271 294 0.97

8 14 0.024 2 9.7 2.9 3 23 410 431 408 431 0.94

9 14 1.5e-06 0.00012 22.9 0.8 1 23 438 461 438 461 0.97

10 14 5.2e-05 0.0043 18.0 0.0 1 23 466 488 466 488 0.98

11 14 0.0016 0.13 13.4 0.6 1 23 494 517 494 517 0.94

12 14 1.4e-06 0.00012 22.9 1.0 1 23 523 545 523 545 0.99

13 14 5.1e-05 0.0041 18.1 3.7 3 23 553 573 552 573 0.97

14 14 0.0093 0.76 11.0 1.6 1 23 579 602 579 602 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00037	0.03	15.4	3.7	3	23	102	123	101	123	0.97
2	14	0.002	0.16	13.1	0.2	1	23	130	153	130	153	0.94
3	14	2.6e-05	0.0022	19.0	0.0	1	23	158	180	158	180	0.98
4	14	0.0052	0.42	11.8	2.4	1	23	186	209	186	209	0.92
5	14	4.4e-06	0.00036	21.4	2.0	1	23	215	237	215	237	0.99
6	14	5.1e-05	0.0041	18.1	3.7	3	23	245	265	244	265	0.97
7	14	0.0093	0.76	11.0	1.6	1	23	271	294	271	294	0.97
8	14	0.024	2	9.7	2.9	3	23	410	431	408	431	0.94
9	14	1.5e-06	0.00012	22.9	0.8	1	23	438	461	438	461	0.97
10	14	5.2e-05	0.0043	18.0	0.0	1	23	466	488	466	488	0.98
11	14	0.0016	0.13	13.4	0.6	1	23	494	517	494	517	0.94
12	14	1.4e-06	0.00012	22.9	1.0	1	23	523	545	523	545	0.99
13	14	5.1e-05	0.0041	18.1	3.7	3	23	553	573	552	573	0.97
14	14	0.0093	0.76	11.0	1.6	1	23	579	602	579	602	0.97

Sequence Information

Coding Sequence: ATGGACGATACTACATGCAAGTTTATTGAAATATTTGCAAATTTTCCATTACTATACGACAAGAAGAATGAATTATATGGCAAAGTAGAAGATAAAAAAAAGGCTTTAACAGACATACAGAACGCATTGTTAAATCAAAATAATATTGATTTCAACCATGAAATGGTTTCCAATGCTGTGCATCAGTTGAAGTATTGGTATTATTTAACCAAAAGACGAAAAAGCAAACTTAGCAAATGTCATGAGCAATATTTAAAACTGTGCACATTTATTCCGGGAAAGCGCATAAAAGAGAAGATTTTATGTAGAATATGCGAAAAGGTCTTTTATACAGAACACAATTTGAAGCATCACCTGTCTAAAGTCCACCAAGTGGGAGATTTTTCGTTTCAATGTGATCTGTGCGGAAAGGAACTTGTTTCGAAAACTGCTTTAGAATATCACAACCTAAGGGTTCATGCAGAAAAGAAATATCCTTGCGAATATTGTGGAAAATTATTCGCTATACCTGCAGAATTGAGGGTCCACACACGTGTTCACACGGCCGAGAAGCCGCACGTGTGCGAATTATGTGGCAAATGTTTTAGGCTACGAAATCTTTTGGGTCTTCATGTTACACGTATGCACACGAAGATACGAGCCTTTAAATGTACAATGTGTCCCAAAGACTTTTTTCAAAATACCGACCTAAGGGATCACATGAAATCTCATTTAAATATACGCGATAAAATATGCGAAACTTGTGGCAAAGGTTTTACAAATTGTCATTCCCTGATACGTCATCGTCAAATACACTCAGATGTCAAAAAATTTGCCTGTAAACTGTGTGATGCAAAATTCCATCAATTTGTTGGACTCAATGGTCATATGAAACGTACTCACAATATAAAACCACTTACTCTTGACCAATGGGACGATGCTACATGTAAATTCATCGAGATATATGCGAAATTTCCAATACTTTATAATGGAGAACATCCGTTATATGGTGAATATGAAGAAAAGCAAAAGGCCATAACAGAAATTCACAACATTTTGCAAAGCGAGCACAAAATAGATTTTAGTGAAGAAACACTATCCGATGCTATAGATCAACTGCAAACGTGGTATTATTCAACCAAACGCCGAAATCGTAAGCCTGACAATGCTAAACTCGGCAAATATTGTGAGGACTATTTGAAAAAGTGCAAGTTTTTACCGGTAAAGCGATTAAAAGTAAAGATTATTTGTAGTATTTGCGACAAAAACTTTCATGCAGAACACAATTTTAAATACCATTTAACGAAAGTTCATCAGATCGGAGACTATACATTTCAATGTAATCAATGCGGAAAGAAATTCATTTCGAAATCGGCTCTACAGGGTCACACCCAAAGAGTTCATTTGGAAAAGAAATATCCTTGCGAACATTGCGGTAAATTATTCGCTATACCTGCAGAACTGAGGGTCCACGCACGCGTTCACACGGCCGAGAAGCCACATGTGTGTGAATTGTGTGGCAAAGGATTTAGATTACGAAATAATTTGGGTCTTCATGTTACACGTATGCACACCAAGATACGTGCCTTTAAATGTACGATGTGTCCTAAAGATTTTATCAAAAATAGCGATCTAAAGGACCATATAAAATCCCATTTAAATATACGCGACAAAATATGCGAAACTTGTGGCAAAGGTTTTACAAATTGTCACTCCTTAATACGTCATCGTCAAATTCACTCAGAAATAAAGAAATTTGCTTGCAAACTATGCGATGCAAAATTCCATCAATTTGTTGGACTCAACGGTCATATGAAACGTACTCATAATATAGTTAAAAAATCCTAA
Protein Sequence: MDDTTCKFIEIFANFPLLYDKKNELYGKVEDKKKALTDIQNALLNQNNIDFNHEMVSNAVHQLKYWYYLTKRRKSKLSKCHEQYLKLCTFIPGKRIKEKILCRICEKVFYTEHNLKHHLSKVHQVGDFSFQCDLCGKELVSKTALEYHNLRVHAEKKYPCEYCGKLFAIPAELRVHTRVHTAEKPHVCELCGKCFRLRNLLGLHVTRMHTKIRAFKCTMCPKDFFQNTDLRDHMKSHLNIRDKICETCGKGFTNCHSLIRHRQIHSDVKKFACKLCDAKFHQFVGLNGHMKRTHNIKPLTLDQWDDATCKFIEIYAKFPILYNGEHPLYGEYEEKQKAITEIHNILQSEHKIDFSEETLSDAIDQLQTWYYSTKRRNRKPDNAKLGKYCEDYLKKCKFLPVKRLKVKIICSICDKNFHAEHNFKYHLTKVHQIGDYTFQCNQCGKKFISKSALQGHTQRVHLEKKYPCEHCGKLFAIPAELRVHARVHTAEKPHVCELCGKGFRLRNNLGLHVTRMHTKIRAFKCTMCPKDFIKNSDLKDHIKSHLNIRDKICETCGKGFTNCHSLIRHRQIHSEIKKFACKLCDAKFHQFVGLNGHMKRTHNIVKKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01162411; iTF_00259952;
90% Identity: iTF_01162411;
80% Identity: -