Pmel006281.1
Basic Information
- Insect
- Phyto melanocephala
- Gene Symbol
- lrrfip2
- Assembly
- GCA_941918875.1
- Location
- CALNXE010000605.1:91876-100960[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1 2.8e+04 -22.5 32.6 37 263 49 322 18 354 0.66 2 3 1.1e-116 2.9e-112 375.4 27.2 1 299 390 686 390 687 0.94 3 3 0.075 2.1e+03 -1.7 3.7 220 245 715 740 690 761 0.47
Sequence Information
- Coding Sequence
- ATGTCAGTGGAACAAAATATAACTGATAACAAAAATGCTGTGACTACAACAAGAAATTCTAGTTTAACAAAAACTAATAAAAAGAATAATAACAATAGCAACAAGAAACTCATTAAAAAAGCTTTGAAAACCTCAAAATCTAAAAAAACTACAACGAATAATACTTCTAATGTCAACAAAAACAGTAACAGCAAAAATTCAAATAACCAAAACACTGACACCATTAACAACAATATTACGTCTACTAGTAGTAGTAGTATTAGTAGCAATCACAACAACAATGTTGAAGTGGCAAGCGATGAAATCATCCAGGAGTTGTTTGATTTTAGTGATACTGATTTGAAAGAACTCGACATTAACGATGATACAGAAAATAACGTAGAAATTAGCAAGAACAACAACAATGAAAATAACTCTACAACTAGTAGAGAACGTTTAACTGAAACCGATGAAGTTGACAAAGAGTCACATGTAGAAAATATGCAAAATTTTATATTAATAAGCGATAATAACAACAATAACCATCATAATAATATTGAGAAAGAGAAAGACTCTGATGATGATGATGATGAAGAGCAACATCAGGTGTCGGGGGAGTCAATATCAACGTCGGCTATTGATAATATTGATAAACAAAACGAACAAAAATCACGGCAAAACAATGAATTGGCAACCGGGTCGTTGACGAATATCGAGACTCCGACGTTTACAAATGATATTAGCAAAGTAGAAGCAAATATAACAAATATACTTGTAATTGACAAAAACCAGTCACAGCAAACAGAGTCATTCAACGTAGAAGCAGAAGCAGTAGGAAATTATGAAAAATTAAACGAGACTACATTGTTGCTAAATAAAGAGGACAATCCTAAAAATCCCGTGCAAATCACCAATGGTTCTATTGTTAAAGAACTTTCTGTAAAGACTCAATCAAGTGACAACAATAAGAAGCAAATGTCAACATCTTCTTTAGACGACACCAAGTCTAAGCAAACAAACGATAATATTGCTACTACTCCAGATGCATCTTTGACTAAAAATAAAGAAAGCAGTTATTATGAGGGTGATGATAATATTGATGATGATCATGCTAATGATAATGACGAAGAGTATACTGAACCATACGATGAAGTTTTAGTTCAGTTTCTTGATGAAGCCAATCAGATTGCTGAGGCTAGATTAGCTGCCAGAAGGCATGCCCGAGCGGAAGCTCGAGAAATACGTATGCGAGAATTAGAACGCCAGCAAAAAGAACAAGAATCTAATGCAGATCGTGTATTCGATATGCATTCAAACGTTACCGGCATAACACCATTGTCACATATGCGTTTAGGTTTAGGAAGTTCACCCGTCTCTGGTTTACTTAACTCCACACGAGGCAATTCTATGTCATCGCGCCGCAGTAGTGAAGATTCACTAGAAGAGGAAGGTCGAAGTTTAAGAGATATTCGTCATGAGTTAAAGGATGTTGAAGAGCGGTTTCGCAAGGCTATGATAGCGAATGCCCAATTGGATAACGATCGTGCCTCACAAACGTATCAGATACAGTTGTTAAAAGACAAACTAGAAGATATGGAAGAATCGTATTCACAATTACAGCGTGAGTGTAAAGAAAAGACACGAGATTGTAATGCCCTGAAACGATCGTTGGACAAATTAAGCGAAGAACTTAAACTGGTACAAGGTCAGCTAAATGAGCGTGACACACTGATATCAGAACAGGGTTTAGTTATTGTGGCAATTGAAAATGAGGATGGCACTGATGCCAAACGTGCTCTAGTCAGTGTTGAAAATGCACAATTATTGGGTTCGGTACAAGGATCATTAGATGTTCGACTTAAAAAATTTAGCGATGAGAAACAGCAACTGCAGGCCGAAGTCCAACAGCTACAGGAACAATTAGAAACATATAAAAGTCAGGGTAAGGGGCGAGTTAAAGGCAATTCTTCAAATGGTCCTTTAGGTTCCGACGATGATGATTATGAAGCTCAAAGAGAAGCGAATAAAATCATTTCGGACTATAAATATAAATTACAGAAAGCTGAACAGGAAATTGCAAGTCTTCAATCTAGTCTAGCACGTTCCGAGACACAAGTTATACGGTATAAAAGTACTGCTGAAGCAGCCGAAAAAGCCGAAGCCGAACTTAAAATCGAAAGAAGAAAATTGCAAAGAGAGAATCGCGAAGCAATGGAAAAACTTGAGGAATTAGAAACCTCAAATAATCATCTACTTAAACGTTTGGACAAATTAAAGAATGCCAAAAGTGCTTTGCTTAAGGATCTCTGA
- Protein Sequence
- MSVEQNITDNKNAVTTTRNSSLTKTNKKNNNNSNKKLIKKALKTSKSKKTTTNNTSNVNKNSNSKNSNNQNTDTINNNITSTSSSSISSNHNNNVEVASDEIIQELFDFSDTDLKELDINDDTENNVEISKNNNNENNSTTSRERLTETDEVDKESHVENMQNFILISDNNNNNHHNNIEKEKDSDDDDDEEQHQVSGESISTSAIDNIDKQNEQKSRQNNELATGSLTNIETPTFTNDISKVEANITNILVIDKNQSQQTESFNVEAEAVGNYEKLNETTLLLNKEDNPKNPVQITNGSIVKELSVKTQSSDNNKKQMSTSSLDDTKSKQTNDNIATTPDASLTKNKESSYYEGDDNIDDDHANDNDEEYTEPYDEVLVQFLDEANQIAEARLAARRHARAEAREIRMRELERQQKEQESNADRVFDMHSNVTGITPLSHMRLGLGSSPVSGLLNSTRGNSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNDRASQTYQIQLLKDKLEDMEESYSQLQRECKEKTRDCNALKRSLDKLSEELKLVQGQLNERDTLISEQGLVIVAIENEDGTDAKRALVSVENAQLLGSVQGSLDVRLKKFSDEKQQLQAEVQQLQEQLETYKSQGKGRVKGNSSNGPLGSDDDDYEAQREANKIISDYKYKLQKAEQEIASLQSSLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMEKLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -