Basic Information

Insect: Physocephala rufipes
Gene Symbol: -
Assembly: GCA_963966595.1
Location: OZ016503.1:20277777-20281515[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00037 0.037 14.9 5.8 1 23 119 141 119 141 0.98

2 11 4.1e-06 0.0004 21.1 0.5 1 23 147 169 147 169 0.99

3 11 8.7e-05 0.0086 16.9 4.5 1 23 175 198 175 198 0.95

4 11 0.0041 0.4 11.6 4.0 1 21 204 224 204 226 0.95

5 11 2e-05 0.002 18.9 2.9 1 23 232 254 232 254 0.99

6 11 3.1e-05 0.003 18.3 1.3 1 23 260 282 260 282 0.98

7 11 0.00036 0.035 15.0 3.6 1 23 290 313 290 314 0.97

8 11 3.8e-05 0.0037 18.0 0.8 3 23 321 341 319 341 0.97

9 11 0.0016 0.16 12.9 0.7 1 23 347 369 347 369 0.98

10 11 3.7e-06 0.00036 21.2 1.5 1 23 375 398 375 398 0.96

11 11 9.9e-07 9.8e-05 23.0 6.1 1 23 412 434 412 434 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00037	0.037	14.9	5.8	1	23	119	141	119	141	0.98
2	11	4.1e-06	0.0004	21.1	0.5	1	23	147	169	147	169	0.99
3	11	8.7e-05	0.0086	16.9	4.5	1	23	175	198	175	198	0.95
4	11	0.0041	0.4	11.6	4.0	1	21	204	224	204	226	0.95
5	11	2e-05	0.002	18.9	2.9	1	23	232	254	232	254	0.99
6	11	3.1e-05	0.003	18.3	1.3	1	23	260	282	260	282	0.98
7	11	0.00036	0.035	15.0	3.6	1	23	290	313	290	314	0.97
8	11	3.8e-05	0.0037	18.0	0.8	3	23	321	341	319	341	0.97
9	11	0.0016	0.16	12.9	0.7	1	23	347	369	347	369	0.98
10	11	3.7e-06	0.00036	21.2	1.5	1	23	375	398	375	398	0.96
11	11	9.9e-07	9.8e-05	23.0	6.1	1	23	412	434	412	434	0.97

Sequence Information

Coding Sequence: ATGTCTGACGAAAATCATGCCTCAACAATTGAGAGTTCGTTATTTGCTACCAAATGTGAAGAAGAGACAGAAATGAACCTAATTAAAATAAGGAAGGATTCTGATAAGATTCCTTCTCTGAGTGGTGACGAAAGCAATGCTGGTGATAAAAGCGATGGAGATATGGATTATATCCTCATATTGGATAACGTCAGCGATAAAGAAGTAGAGTCGAAATTAGATGATCATTcggaaaaagaaatttatgtttttaatgaaaatgagaCGGATGACAATCATCAAAACGATGACGTCGCAGTTCCCTCGAATACCATACGTCTGAAAGCGAATTCTTCGGACAGCAATCCCGCAACTCATCAGTGCAGTCATTGCGACTACACAACTACTAAACGATATTTATTATCGAGACACCTTCGGGCTCATTCGGATGATCGACCATATAAATGCTCGGTCTGTGAGCGTGGTTTTAAATCGAACGCTTCTTTGTTGAATCATGTGAACACTCATTTAGGCAACAAACCCCACCATTGTAAATACTGCGAAATGACATTTACCACATCGGGGGAATTAGTACGCCATGTTCGCTACAAGCATACGATGGAAAAGCCTCATAAATGCACTGAATGTGATTATGCCAGTGTAGAGCTTAGCAAATTGAAGCGCCATATGCGTTGTCATACAGGTGAACGCCCTTATCAATGCCCGCACTGTACATATGCTTCACCGGATACATTTAAACTAAAACGTCACATGCGCACGCACACCGGCGAGAAGCCGTATGAATGTGATATTTGCCATGCTCGGTTTACGCAATCCAATTCTATGAAGGCTCATCGTATGATACACAGCGTCGGTGAGAAACCTGTTTTTCAGTGCTCGCTCTGTCCAACGACATGTGGACGAAAAACAGATCTTCGTATACACATTCAAAAATTGCATCATTCGGATGAACCAATTAATTGTAAACGATGCGGTAATAGTTTTCCTGATCGTTATTCCTACAAAGTTCACATAAAGACACATGATGGTGAAAAGTGTTTCAGATGCACCGTTTGCTCCTACGCTTCAATATCAGTACGCCATTTGGAAAGCCATATGCTAATACATACGGATGAGAAGCCCTTTACATGCGAGATTTGTTCGTTATCCTTTCGGCAAAAACAATTGCTAAAACGCCATATAAATCTATATCACAACAAACTATATGTACCGCCAAAGCCGTTAGAGAAACGACACACTTGCCCCCACTGTCAACGGTCCTTCTCTCACAAGGGTAATCTGATGCGTCATATGGAATTACATGATCCAGATTCTAATCTACAACAACAGAagcttgaattaaaattaggaCGCAAAACGCGCGTGAATACCGATTGTTCCATTGAAGTACTTGATCAGGAGAATGATACGATAATTCAAAAGTATTATGACGAAAATGAAGATTACTATGAGCGTgcagattttgaaattattgagacCGTAGAAAACGAAGATATAGACCAAAAACCAGTTATACCCAagcatttgaaaaaagaaaatgatttaCCCAAAAATTGGATTGATGACACCACCACAGACATTAAAACGATGTCAATTAAAAGAGAAGCTGATGGCAAAGAGTTTGTAGCCGTGGAAGATATGAATGGGGAACAGTATGTAGTCGTTGAAGTAATTCATTGTTCAAACGAAGAAGGCGATACGGATGAAGATTCCGTGATAAGCGAAAATTCAAATCCaaATATCTCAATCATCAATTCGCTTAGGAGCTTAAACAATAACGATATTAGTATCCAAGATAGCTATGATgattcaaataaaaaggaaactaTACAATTGCTGGAGGTTATAGATGATTAA
Protein Sequence: MSDENHASTIESSLFATKCEEETEMNLIKIRKDSDKIPSLSGDESNAGDKSDGDMDYILILDNVSDKEVESKLDDHSEKEIYVFNENETDDNHQNDDVAVPSNTIRLKANSSDSNPATHQCSHCDYTTTKRYLLSRHLRAHSDDRPYKCSVCERGFKSNASLLNHVNTHLGNKPHHCKYCEMTFTTSGELVRHVRYKHTMEKPHKCTECDYASVELSKLKRHMRCHTGERPYQCPHCTYASPDTFKLKRHMRTHTGEKPYECDICHARFTQSNSMKAHRMIHSVGEKPVFQCSLCPTTCGRKTDLRIHIQKLHHSDEPINCKRCGNSFPDRYSYKVHIKTHDGEKCFRCTVCSYASISVRHLESHMLIHTDEKPFTCEICSLSFRQKQLLKRHINLYHNKLYVPPKPLEKRHTCPHCQRSFSHKGNLMRHMELHDPDSNLQQQKLELKLGRKTRVNTDCSIEVLDQENDTIIQKYYDENEDYYERADFEIIETVENEDIDQKPVIPKHLKKENDLPKNWIDDTTTDIKTMSIKREADGKEFVAVEDMNGEQYVVVEVIHCSNEEGDTDEDSVISENSNPNISIINSLRSLNNNDISIQDSYDDSNKKETIQLLEVIDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00366656;
90% Identity: -
80% Identity: -