Pruf017971.2
Basic Information
- Insect
- Physocephala rufipes
- Gene Symbol
- -
- Assembly
- GCA_963966595.1
- Location
- OZ016504.1:36178895-36184170[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 6.7 6.6e+02 1.5 6.5 1 23 269 292 269 292 0.94 2 27 9.9e-05 0.0098 16.7 0.1 1 23 302 325 302 325 0.96 3 27 1.6e-05 0.0016 19.2 0.6 2 23 330 352 330 352 0.95 4 27 0.99 98 4.1 0.1 2 23 361 383 360 383 0.92 5 27 0.0011 0.11 13.4 0.7 2 23 407 428 406 428 0.97 6 27 4.4e-06 0.00043 21.0 2.7 1 23 434 457 434 457 0.96 7 27 0.11 11 7.2 1.7 2 23 474 494 473 494 0.97 8 27 0.0075 0.74 10.8 4.9 1 23 509 531 509 531 0.95 9 27 0.00038 0.037 14.9 3.4 1 23 540 563 540 563 0.96 10 27 0.00029 0.029 15.2 2.3 1 23 568 590 568 590 0.96 11 27 2e-06 0.0002 22.0 0.2 3 23 597 617 595 617 0.97 12 27 0.016 1.5 9.8 2.1 1 23 623 645 623 645 0.98 13 27 0.0013 0.13 13.2 3.0 1 23 650 672 650 672 0.95 14 27 0.75 74 4.5 3.7 1 23 677 701 677 701 0.97 15 27 1.4 1.4e+02 3.6 0.1 8 23 745 760 744 760 0.93 16 27 0.046 4.5 8.3 4.6 1 23 768 791 768 791 0.97 17 27 4.6e-05 0.0046 17.8 0.4 1 23 798 820 798 820 0.96 18 27 1.3e-06 0.00013 22.7 2.1 2 23 826 847 825 847 0.97 19 27 0.0029 0.28 12.1 2.4 1 23 853 875 853 875 0.97 20 27 0.00041 0.041 14.8 2.4 1 23 880 902 880 902 0.97 21 27 0.49 49 5.1 0.5 1 23 907 931 907 931 0.92 22 27 0.00014 0.014 16.3 6.0 1 23 985 1008 985 1008 0.95 23 27 2.3e-05 0.0022 18.7 0.9 1 23 1014 1036 1014 1036 0.96 24 27 2.2e-06 0.00022 21.9 1.1 2 23 1042 1063 1041 1063 0.96 25 27 0.0037 0.36 11.8 2.6 1 23 1069 1091 1069 1091 0.98 26 27 0.00082 0.081 13.8 3.3 1 23 1096 1118 1096 1118 0.97 27 27 0.052 5.1 8.1 0.3 1 23 1123 1147 1123 1147 0.96
Sequence Information
- Coding Sequence
- ATGGAAACCTATGATTTGGCAGTGGAGTGTCGCGCTTGCCTCAGCACTAATTCTGCTGAATACATCGATATGGATTCAGTGATGGCCGGTGACTACACTATCTTCGATTGCTTCAATATGTGTACAAATTTGAGAGCGGATCGTGAGGATGAACTGCCGGATACCATTTGTTCCGCCTGCTCGCACGGTCTGCAAAttgcatttgattttataCAGGCAGCACGACAAGCGGATGAAGTTTTACGAGAGAATTTACGAGCAAATAAACTACAAATAAATACCGTCAATGGAGAACAGGATGAAATCGAGCAGTTGGAATACGTCGAAAGTGTCGAAGATTTAGCTACGGATATAAATGATACAGAAGAGCATATATTGGAATTAGAGCTGGGCGAAATGGAGGACAGTGTAGAAAAGAGAGTTGAATATGTGGACGATAATTGCGAATATATGGAGGAGTATAATCGGGAAAAATCATTCCACCAAATAGAAGATTCCGAGATCCCGCTTCAAAATTCGTTTGAAGAGAAATCAGAAATAGAGCATCTAGAATTAGAAGTTCAGCAAAATAATCATGAAGCATATAAAGAGGATACCAAAAAAGTCAACAACATAAGatttatcaaaaaagaaatgcCAGAATCCTATCCAGAGGATGAAGTGGACGATGAGTATCTTGTTGAATACGACGAATCCATGGACAAAGGAGAATCACAAGGCTGGAAATGCTTCGAATGCAAACGCGTACTACATGCAGACGTTTCCTATGAAGGACATTTAAATATACATAAGAATGTAAAGCCATACAAATGCACGCAATGTCGAAGTACATTTCGTTGCAGAAACGCTTTAGAACATCATGCTAGCAAACGTCACGCTCATGAGAAAAATGCCCTGAAATGCTTTACTTGTGAAGTTTGTGGAAAACCATTCCGATTGGCGACTTTGCTTCTAGAGCATAGGCGAGCAGAACATAAGAcatTGGAGAGCTGTACACGATGTGGAAAATCATTCAAATCTGAGGAATTGTTAAAAGAGCATATGACAATTATTCATCCACCTACAAATACTATACCTCTTCAATGCCCGTATTGTTCGCAGCCATCAATGCCAAAACCTCGTTTAGTTGAACATCTCCGGCTACAACATCCAGCCGAACATCGTCGACATTTGCACACAGTCGGACGACCTTGCGACGAGAACAAAGTGACACCATGGCAATGTGAAGAATGTTTTCGCTATTATCGTACTGAAGCATTACTTAAGGATCATCGCAACACCCACACGAACGAACGACCACACAATTGTAGCGTGTGCGATAAGCGATTTTTTACAGCCAATAACCTTCGTAGTCATATGCGTTCAATACATCAGGCTGAATATGAAAAGCGGCTGGCCGAAAGTTTGGATAATGTTGTTCAATGCAGTGTCTGCAAAAAGAGActgttgcaaaaaaattttgataaacacATGCTTACACATGAGCGCAAGGAAAAGCAGACGACGGAAGCAACGACGGCAAAATATCTGTGTGCCTACTGCCCCCGTGCATGCAAAAGTCGGAAGTCTCTGAATCACCACACGAAACTTCATCAGTCAGAGGAATCGGGAATAACGTATGAATGTACAGAATGCGAGCGTCATTACGCAACTCAGCAACATTTAGAGCAACATCGTAAACAAGCCCATAAAGAACGAGATCATTTTTGTTCCATCTGTGGCAATGCATTCAaacttaaaaatcaattaatgaacCATATGAAGTtacatttagaaaaaaatatagcaTGCCCCTATTGCGATAAGAAATACGCTCGACAGTTCGATTTGAATGTACATCTGCGCAGTCACACTGGCGAGCTACCTTACGCTTGTCATTTATGCGAAAGACGTTTTGCTATAAAGGTACGTCTTACTTACCATCTGCAAAAACATTTGGGCATCAAACATCGTTGCAAAGAGTGCGGCGCTGAGTTCAATTCTAAACAGAAGCTGAAAGCACATTCCTATAAGCACACGGGCATGCCATACCGGTGCGAAACCTGTCATAATCACGGTTTTGCCAATAGAGACGTATTTAAACGCCATTTATTAAGAGTCCATAATACGTCAATGTCCGATGAGGAATTGGTTGAAATGTTTCAACGGAACACGGGAAAAACTACGGTTATACGTCCAATTGAGAAGGCACCTATGCTTGTATCGCCCACATCAGGAGATGTAAATGCCACCAAATCGTTCGGTAGCCAGGCAAAGCTAAATAAGCACGAAGAAGTGCACAATCCAAATCGGAGGCGTGATCATCCGTGTGATTACTGTACATCGAAGTTTTACACTAATTACGATAAAATCCATCATATCCGACGTGTTCATCTATCAAACGAAAGAACTTTTATATGTTCCATTTGTGGTAATTCGTATAAGGAAAAATCGCAGTTGcgtaatcatttaatattgcATACGCAAAAGAATATCCAGTGTCATCTTTGCGATAAGAAATATGCTCGCCAAACAGATTTACGAGTGCACATGCGCAGCCACACGGGCGAATTGCCGTTTGCTTGTCATTTATGCGATAAGCGATTTGCCATCAAGGTACGCCTTACATATCATCTGCAGAAACATTTGGGCATTAAACATACATGCAAAGAATGTGGAGCCACGTACAATAGCCGTGGCAAACTGCGTATGCACATTTTTAAACACAATGGTATGCCGTATCGTTGCGAAATTTGCCCAGAGGCTCAATTTTCAAAACGCGAGCGTTTCCGTTTGCACATAACACGAGTGCATAGTCGAACCCCCAGTGAAGCTGAATTAACTGCAAATTTTGAGAGGAACACGGGTAGAGCTACACGCGTTAAGGACCTACAGACGCAAGAATTTACCAAACAGAAGTATCTTGCAAAGCACGAAGAAGGCGCTCATTTACTTAAGCAACAAGATCCTCAACATACTTGCCCGCAGTGTGATAAAAAGTTCTTTCAACATAAACATCTACAGGCACATATGGGACGAGTGCATACACAAGTGCGCCGACATATTTGCAATATATGCGGTAATACATTTAAAGGACGATCACAGCTCTCCGCTCATATAAAATTGCACATGGAAAAGAATCTAAATTGCCCCCattgtgaaaaaaaatatgctcGCCGAGCCGATCTCACTGTGCATATGCGTAGTCACACCGGCGAATTGCCGTATGCCTGTCATTTGTGCAATAAGCGTTTCGCTATTAAGGTGCGACTTACTTATCACCTTCAACGTCATGAAGGCGTGAAGCATCCATGTACACATTGCGGAGCTGTCTACGACAATCGTAATAAGCTGAAGGAGCACATGTTTAAACACACGGGTATGCCATATCGTTGTGAGGAATGTCCAGGTGTAGAATTCTCTCGACGGGTACGtttcatcaATCATATGCTGCGCACGCACGAACGTCAAATGAGCGATGAGGAGTTAGCTCAAATGTTTGCCAAGAATACCGGTAAAGCAATTCGATTCAAACAGCTGGACAATAGCAATTCGACAAATCCCGATTTTTGTGATGATTCCCAAGACACAAAGGAATTTATACGaattaataattgcaaaagTACAAACGAaacgtaa
- Protein Sequence
- METYDLAVECRACLSTNSAEYIDMDSVMAGDYTIFDCFNMCTNLRADREDELPDTICSACSHGLQIAFDFIQAARQADEVLRENLRANKLQINTVNGEQDEIEQLEYVESVEDLATDINDTEEHILELELGEMEDSVEKRVEYVDDNCEYMEEYNREKSFHQIEDSEIPLQNSFEEKSEIEHLELEVQQNNHEAYKEDTKKVNNIRFIKKEMPESYPEDEVDDEYLVEYDESMDKGESQGWKCFECKRVLHADVSYEGHLNIHKNVKPYKCTQCRSTFRCRNALEHHASKRHAHEKNALKCFTCEVCGKPFRLATLLLEHRRAEHKTLESCTRCGKSFKSEELLKEHMTIIHPPTNTIPLQCPYCSQPSMPKPRLVEHLRLQHPAEHRRHLHTVGRPCDENKVTPWQCEECFRYYRTEALLKDHRNTHTNERPHNCSVCDKRFFTANNLRSHMRSIHQAEYEKRLAESLDNVVQCSVCKKRLLQKNFDKHMLTHERKEKQTTEATTAKYLCAYCPRACKSRKSLNHHTKLHQSEESGITYECTECERHYATQQHLEQHRKQAHKERDHFCSICGNAFKLKNQLMNHMKLHLEKNIACPYCDKKYARQFDLNVHLRSHTGELPYACHLCERRFAIKVRLTYHLQKHLGIKHRCKECGAEFNSKQKLKAHSYKHTGMPYRCETCHNHGFANRDVFKRHLLRVHNTSMSDEELVEMFQRNTGKTTVIRPIEKAPMLVSPTSGDVNATKSFGSQAKLNKHEEVHNPNRRRDHPCDYCTSKFYTNYDKIHHIRRVHLSNERTFICSICGNSYKEKSQLRNHLILHTQKNIQCHLCDKKYARQTDLRVHMRSHTGELPFACHLCDKRFAIKVRLTYHLQKHLGIKHTCKECGATYNSRGKLRMHIFKHNGMPYRCEICPEAQFSKRERFRLHITRVHSRTPSEAELTANFERNTGRATRVKDLQTQEFTKQKYLAKHEEGAHLLKQQDPQHTCPQCDKKFFQHKHLQAHMGRVHTQVRRHICNICGNTFKGRSQLSAHIKLHMEKNLNCPHCEKKYARRADLTVHMRSHTGELPYACHLCNKRFAIKVRLTYHLQRHEGVKHPCTHCGAVYDNRNKLKEHMFKHTGMPYRCEECPGVEFSRRVRFINHMLRTHERQMSDEELAQMFAKNTGKAIRFKQLDNSNSTNPDFCDDSQDTKEFIRINNCKSTNET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00366644;
- 90% Identity
- -
- 80% Identity
- -