Pruf013106.1
Basic Information
- Insect
- Physocephala rufipes
- Gene Symbol
- bab2
- Assembly
- GCA_963966595.1
- Location
- OZ016503.1:27098205-27103727[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.1e-18 1.9e-14 53.5 0.0 1 43 94 137 94 139 0.95 2 2 0.83 2.2e+03 -1.1 0.3 2 21 280 299 279 300 0.82
Sequence Information
- Coding Sequence
- ATGGTCGTTTTTGGCCATTTCATGAAGGAAAAGTGGGAGACATTTGGTTGGACGAATGGGAAAAGGTGCAAAATGGGAAATGAAGCGGGGAATGAGGTGCTGACGGCAAAACTGATTGAGATAGGCGGACATCCTTGGATGAGCGCTGCTTCGACTTCCTCCGTGGCTGACAGCTACCAGTATCAGCTACAGTCGATGTGGCAAAAATGCTGGAATACCAATCAGCAGAGTCTTGTGCAGCAGTTAAGATTCCGTGAACGTGGCCCATTAAAATCATGGCGTCCGGAAGCAATGGCTGAGGCTATATTCAGCGTCCTACGAGAGGGTCTTTCGTTGTCGCAAGCGGCTCGCAAATATGACATACCTTATCCTACATTCGTCCTCTATGCAAATCGCGTGCACAATATGCTCGGGCCATCGCTGGATGGTGGCACTGATCCACGTCCGAAGGCTCGAGGAAGACCACAACGTATCCTGCTTGGGATGTGGCCGGAGGAACTGATACGTTCGGTTATAAAGGCAGTCGTGTTTAGGGATTATCGAGAGATCAAAGAGGAGCTTGCTGGACATCAGTATGCCAACGGAGGATCGACAGTGCATGTGTCTCCGTATGGAACGACTTCGGTTGCCAATGGCTATCACAACACTTCTAAATTGGCAACTATGCAGCAAATGGCACAAAATGCCACTCTAGCGCCACCACCTGATGCATCCAGTCCACTTTCGACGATGACCGAAACGCTGCGGCGTCAAATCAtggcgcaacaacaacaatcaccaTCGGcccaatcaatcaatttgtACAAGTCACCCGCTTATCTGCAACGTTCCGAGATCGAGGATCAGATGTCGGCCGCCGCTGTTGCGGCAGCGAAGCAGCAAACGGGAGTTAACCGTGTCGGTGCCGAAAACTTGCCCGATTTAAGTGCTCTAGGTTTAATGGGCATACCTGGCCTGAATATAGTTCCGACCCAAACGCAACGCAGCAGTCAATTACATCCGAATGCAGTGGCAGCAGCCGCATATTCGCAGGAAAGAGAACGTGAACGTGAGCGTCAGCGAGAAAGGGAAAGAGAACGTGAACGGGAAAGGGAAAGAGAGCGGGAACGAGAGCGTGAGCGTGAGCGTGAAAGAGAGCGTGAACGTGAGCGTGACTTAAAGGAAGCTATGCAAGCTCGTCAGTATGGTAATCAGTCACGGGGTTCCGCCTCTAACCAAAAACAGCATTCCGCCGCGATGACTGCTGGCCACGTAGCAGCCGGAATTAGCAGTGGTGCCGCCTCACCATTTGGTCAATACAAGAACAAGGAACACCCAAGTTATGCGTATAACAAACGCTTCCTTGAGAGTTTGCCACCGGGCATCGATTTTGAAGCGATCGCTAATGGTTTGCTTCAGAAGTCGGTGAATAAAAGTCCGCGTTTCGAGGATTTCTTCCCCGGTCAAGACATGAGTGATCTCTTTACAAACGCAGAAGCTGTTGCGAGTGCGGCCTATCCGCCCGTGCGAGAATCTCCGCTAATGAAGATCAAATTGGAGCAACACAATGCTGAGGTGCCGCATGAAgattag
- Protein Sequence
- MVVFGHFMKEKWETFGWTNGKRCKMGNEAGNEVLTAKLIEIGGHPWMSAASTSSVADSYQYQLQSMWQKCWNTNQQSLVQQLRFRERGPLKSWRPEAMAEAIFSVLREGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSLDGGTDPRPKARGRPQRILLGMWPEELIRSVIKAVVFRDYREIKEELAGHQYANGGSTVHVSPYGTTSVANGYHNTSKLATMQQMAQNATLAPPPDASSPLSTMTETLRRQIMAQQQQSPSAQSINLYKSPAYLQRSEIEDQMSAAAVAAAKQQTGVNRVGAENLPDLSALGLMGIPGLNIVPTQTQRSSQLHPNAVAAAAYSQERERERERQRERERERERERERERERERERERERERERERDLKEAMQARQYGNQSRGSASNQKQHSAAMTAGHVAAGISSGAASPFGQYKNKEHPSYAYNKRFLESLPPGIDFEAIANGLLQKSVNKSPRFEDFFPGQDMSDLFTNAEAVASAAYPPVRESPLMKIKLEQHNAEVPHED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00366430;
- 90% Identity
- -
- 80% Identity
- -