Basic Information

Insect: Phymatocera aterrima
Gene Symbol: -
Assembly: GCA_963170745.1
Location: OY720664.1:1475824-1479561[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 3.8 4e+02 2.2 0.1 2 12 519 529 518 537 0.88

2 14 1.4e-05 0.0015 19.3 0.4 1 23 548 570 548 570 0.98

3 14 3.7e-06 0.00038 21.1 4.2 1 23 578 601 578 601 0.97

4 14 0.009 0.94 10.5 0.1 1 23 613 636 613 636 0.93

5 14 0.0022 0.23 12.4 2.9 1 23 663 686 663 686 0.96

6 14 0.0019 0.2 12.6 1.5 1 23 692 714 692 714 0.96

7 14 0.016 1.6 9.7 3.2 1 23 729 751 729 751 0.94

8 14 0.028 3 8.9 1.1 1 23 757 780 757 780 0.96

9 14 3.7e-06 0.00039 21.1 3.6 1 23 794 816 794 816 0.98

10 14 1.1e-06 0.00012 22.7 0.7 1 23 822 844 822 844 0.99

11 14 0.007 0.74 10.8 0.3 1 23 850 872 850 872 0.97

12 14 0.0063 0.66 11.0 3.7 1 23 878 900 878 900 0.98

13 14 1.9e-07 2e-05 25.2 1.2 1 23 906 928 906 928 0.99

14 14 5e-05 0.0052 17.6 1.0 1 23 934 957 934 957 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	3.8	4e+02	2.2	0.1	2	12	519	529	518	537	0.88
2	14	1.4e-05	0.0015	19.3	0.4	1	23	548	570	548	570	0.98
3	14	3.7e-06	0.00038	21.1	4.2	1	23	578	601	578	601	0.97
4	14	0.009	0.94	10.5	0.1	1	23	613	636	613	636	0.93
5	14	0.0022	0.23	12.4	2.9	1	23	663	686	663	686	0.96
6	14	0.0019	0.2	12.6	1.5	1	23	692	714	692	714	0.96
7	14	0.016	1.6	9.7	3.2	1	23	729	751	729	751	0.94
8	14	0.028	3	8.9	1.1	1	23	757	780	757	780	0.96
9	14	3.7e-06	0.00039	21.1	3.6	1	23	794	816	794	816	0.98
10	14	1.1e-06	0.00012	22.7	0.7	1	23	822	844	822	844	0.99
11	14	0.007	0.74	10.8	0.3	1	23	850	872	850	872	0.97
12	14	0.0063	0.66	11.0	3.7	1	23	878	900	878	900	0.98
13	14	1.9e-07	2e-05	25.2	1.2	1	23	906	928	906	928	0.99
14	14	5e-05	0.0052	17.6	1.0	1	23	934	957	934	957	0.96

Sequence Information

Coding Sequence: ATGCTGAAACTAGTATTGCAGACCCAGGAGGGTCAGCAAATCGAAGTGACAGTGAGCCCCGATGATACATTTGAAGATTTAAAGAGGCAATATGAAAGCCCCGAGAATCCAGGGCTGCCTGAGCTTCTCAAGCATTTAATAACTAACGGAATAGAcgttgatgaaaaaacaaaagtatTTGATTACGTTACGAACAGCAGTTCAACGGAATGGCTGGTAGAAGCATCCCTTGAAGATATTACAGGCCTTGAATCAACGGTCGataatttacaaaatataGTGAAAGAAACTCCGCTGAAAGTATGCTGCGTAGATAATTGTCCCAATACAGAGATAACGGCAACGGATAAAGTCTTTTTTCCTTTACCCAGAGATAAAGATAGATTATCGTCGTGGTTAATTGGTATAGGAAAACCTGAGCTATTTGATATAGCGATAGAGTCAGAAAATGATATTGAGGAGAAGTACTTTGTTTGCGCAGATCATTTTGCACCGCATCAATTTTTGAAGGGAACTAATCAAGTATTGAGAAGAAGAGCGTGTCCTTCTATTCTGCCTTTTGCTAACGAAGAACAACCGAACTCGTCAACAATTGATGCGAAAGATCCTTTACTTATAAAAACTGAATCAACGGAAGATACAACTTTAATTCAAGTTACGGAGAAAAACTGTGATCTGAATGTTGCAGCGGATAAAATGTTAAAATTGTTCGATGATTCTTCAACTGAGAAAACTCATCCAGGTGTATTATGCCGATTATGTGGCGAGCACACTGTAAATccagtttttctattttccacgAATGATTGTAGCAGAGATTTTTCTGTTGCGGATAAAATAAACTTGTGTTTACCTATAACGgtAAACGCAAAAGACCCTCTGCCAAAACAAGTGTGTGGAGAGTGTTTTGAAAAGCTTGAAATGTGCCATAAACTAGCGAGAACGTGTCTCGAGACGGAAGATAAATTGAAAGCGATGTTTgagatgaaaaagtttcaaGTCAAAAATACGGAAGATAAAGATTGCCCTTTGTGTGTATCAGGAAATATGAGGATCGTAACGAAAAGTGGAATTTATCGGAAAGATAAAGCTGAGAGTATtccagaaattttgaaaaactccAGTGCTCGTACTAGACAAGTTTCTCCATCGAAAAACTCGCAGAATAAAATGGGAACTTGGAGTTCTATTGATAAAAAGCCTCTTCAGGAGCCTGGCAACGTCATGACCACaacaatagaagaaaaatcatttgaGGATGAAGACATGTCTGTAGATCCACCATCGTGTTTAATACAAGGTGAATTATCGTGTTCTGTTTGTTTTCGGAAAGATAATAGCGTAGAAAGTTTGGTCCATCACGCAAAAGACCACGCTGCGTATCCATGCACAATTTGTAAAGATGTAAATTTCAAAACAATGAACGAACAGCAATTACACTTTCTGAAACATGGCGTGAGCGAAGGATACTGCGAAATATGTTCTATCGAGTGGACCAATATTGAGAATGCCGCAGAGCACATCAAACTCTGTAGACCGGAGTTTTGGAACGTAGAATGTGCTCAGTGCGGAGAAAAATTCCCACATGTTGAAGCGGGTCAAGATCACGTTTGTCAAAGATCAGAAACTGAGGGAGAATGGTTCGAGTGCGATCAGTGTGGGgacaaattttctgaaaagggAAACCTAAATGTGCACATGAAGTCGCACGACAAGCGAGAAAATAATTACTACAAATGTTCATATTGCAATAAACAGTTCAGCCAGAAAGGAAGTTTACATAAACATATCTCGAGCCTCCATGCAGATGCGGAGTCTGCAGTGAGCCAGAAGTGCTACAAATGCAGAAAGTGCAATGAGGCTTTTGCGACCCTGGCAGGCGCCGAAGCGCACATAACGGAAAAACATTTCAGCCAATTAATAATGGCAGATATGAACTTCATTAGCGATCAATTCACGGCGGAAGAAATGAATTTGTCTCGTGTTTATATCTGCGAATATTGTGAACGTTGTTATACGATACCTAGCTCTTTGCATGATCACAGACAGAATGAACATTGCGATAATTTAGAGTATCAATGTAACGTTTGTAGCAATACATTTGAAACTTATAAAGCTTTGTTACGTCACAAGACGTTGCATGTAAAAGAAAATGAGTTCGAAGATTTAGCCGTGAAGCAATACTACCTTTGCAATTATTGCAACAAAACGTTTTTACATTACGGTACATTAACGGTTCATACTTCTCAGCATCTACCGCCACTACCCTATTTATGTAAACTTTGTAATTTCCAATTTGCTACTTATAAGGAAGTAGCGGAGCATAGAAAAACCACGCACCCTTATCAATCCGTTCTACACGAAAGACCCAATAATTCATATCATTGTCAATACTGTGAGAAAAGCTTCACTCATGAAGTAGCGCTCATTAAACACATAAGAATGCACACTGGGGAAAGACCCTATAAATGTACCGTGTGCGGTAAAGGATTCTCGCAGACATCGGGCCTCTATACTCATCTTAAGGTTCATTCAGATTTGAGGCCTTACGCCTGCCCGCAATGTCCTCAAACTTTTAAAATCAAAGGTGACAGAGATAATCATGTAAAGAAACATTCCGGCGATCGACCTTACAAGTGTGATTTTTGTGAGAAAGCATTTATGACGCAACATGTCTATAGCCAACATAGGAAAATACATACAAATGAAAGACCGTATAAATGTGATATTTGCGGAGAAGCTTTTAGACGCTCGCACGTATTGACTGTTCATATGAGACGGCATACTGGCGAGAAACCTCATGTTTGTGATATGTGCCCTAAGGCTTATAGACAACGCGGCGATTTGttaaaacataaaaaaatacaacatGGCATCGGGTCCAATAGTTCAAATGGTATTGTTAGTCAGTCAAATACAAATACTGCAAATTCTAGTGATATTTCAAGCATGGAATCTTCTgcaatttttctatcaatttga
Protein Sequence: MLKLVLQTQEGQQIEVTVSPDDTFEDLKRQYESPENPGLPELLKHLITNGIDVDEKTKVFDYVTNSSSTEWLVEASLEDITGLESTVDNLQNIVKETPLKVCCVDNCPNTEITATDKVFFPLPRDKDRLSSWLIGIGKPELFDIAIESENDIEEKYFVCADHFAPHQFLKGTNQVLRRRACPSILPFANEEQPNSSTIDAKDPLLIKTESTEDTTLIQVTEKNCDLNVAADKMLKLFDDSSTEKTHPGVLCRLCGEHTVNPVFLFSTNDCSRDFSVADKINLCLPITVNAKDPLPKQVCGECFEKLEMCHKLARTCLETEDKLKAMFEMKKFQVKNTEDKDCPLCVSGNMRIVTKSGIYRKDKAESIPEILKNSSARTRQVSPSKNSQNKMGTWSSIDKKPLQEPGNVMTTTIEEKSFEDEDMSVDPPSCLIQGELSCSVCFRKDNSVESLVHHAKDHAAYPCTICKDVNFKTMNEQQLHFLKHGVSEGYCEICSIEWTNIENAAEHIKLCRPEFWNVECAQCGEKFPHVEAGQDHVCQRSETEGEWFECDQCGDKFSEKGNLNVHMKSHDKRENNYYKCSYCNKQFSQKGSLHKHISSLHADAESAVSQKCYKCRKCNEAFATLAGAEAHITEKHFSQLIMADMNFISDQFTAEEMNLSRVYICEYCERCYTIPSSLHDHRQNEHCDNLEYQCNVCSNTFETYKALLRHKTLHVKENEFEDLAVKQYYLCNYCNKTFLHYGTLTVHTSQHLPPLPYLCKLCNFQFATYKEVAEHRKTTHPYQSVLHERPNNSYHCQYCEKSFTHEVALIKHIRMHTGERPYKCTVCGKGFSQTSGLYTHLKVHSDLRPYACPQCPQTFKIKGDRDNHVKKHSGDRPYKCDFCEKAFMTQHVYSQHRKIHTNERPYKCDICGEAFRRSHVLTVHMRRHTGEKPHVCDMCPKAYRQRGDLLKHKKIQHGIGSNSSNGIVSQSNTNTANSSDISSMESSAIFLSI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00060562;
90% Identity: -
80% Identity: -