Pate013575.1
Basic Information
- Insect
- Phymatocera aterrima
- Gene Symbol
- -
- Assembly
- GCA_963170745.1
- Location
- OY720663.1:17554637-17557558[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0031 0.33 11.9 3.5 2 20 161 179 160 182 0.94 2 13 0.0013 0.13 13.2 0.4 1 23 188 211 188 211 0.92 3 13 4.8e-05 0.005 17.6 2.6 1 23 217 239 217 239 0.98 4 13 5.8e-06 0.00061 20.5 2.2 1 23 393 415 393 415 0.97 5 13 0.032 3.3 8.8 0.6 2 21 425 444 424 445 0.92 6 13 0.00045 0.047 14.6 2.0 1 20 467 486 467 489 0.92 7 13 0.0055 0.58 11.2 0.9 1 23 494 517 494 517 0.95 8 13 1.8e-06 0.00018 22.1 0.1 1 23 523 545 523 545 0.99 9 13 0.00086 0.09 13.7 5.4 1 23 552 574 552 574 0.98 10 13 0.0004 0.042 14.7 0.4 3 23 582 602 580 602 0.97 11 13 0.00045 0.047 14.6 0.2 1 23 608 631 608 631 0.96 12 13 0.38 40 5.4 0.2 1 23 645 667 645 667 0.94 13 13 0.00018 0.019 15.8 0.1 2 23 951 972 950 972 0.96
Sequence Information
- Coding Sequence
- ATGGAAGCGAGTGAAAATGATGAACAGCGATACGTGGCTTTTCCGCTCTCAACAAACGATATGCACGATTCAATGCAAGAGACAATAATATCTCATGAAGAAATATGCGAGCCAGTAGACGGAGTAGACGATTGCGTATTATCAGCAGCGGGAGATAGTTTACCCGAAGTGACAGTGAGCGAGGAAGTTGAATCGCGAATAACCGAGGTGCAAGCGGCAGTTGAAATCCTCGGATCAAATTCCGACCCGGAAGAGGACGACGATAGTTCTTCGGTTTATCCAATTTATATAAAACAAGAAGAACCTCAGCCGTATACATCAGGCGACGACGAGTCAATGGCAGTTGAGGCGCTACGTCAGCTGGGCGGAATGTACCCGTGTAgttataacgaaaaaaaaatatcatgtcCAAATTGCGCGAATTTATTTACCCACATTGAAATGGGTAAACACCACCCAAATTGTGCCGCCGTTAAATTGTGTTGCACTACGTGTGGCGAaagatttgaacgaaaaatcgatcTCAATAATCACATGGTTTGTCATCAGGTCGACAGACCACACGCTTGTAGAACTTGCGGTAATTTATTCAGGTCCAAGGCCAGTCTACAGGCTCACATGGCCGAAGTACACCAAGTAGAACGTCCTCACAAATGTACTATCTGCAATTCTAACTTTCAGCGACCCTCTAGTCTCTCTAATcacatgaaaattcatacttacGTCGCCGGCAGGGCCATTATGCAAACTTCTAATAACGTCGCCCAACaaaccgttgaaaattttcgaaaatggcCAGAGAATAGCGGCGCCGATTCCCCCAGTACTTCtgttccttcttcttccgtttccTCCATTCCTAATTACGAAGTCCCCCAAGTACATTGGTCAATCCCTACTTATACCTTTGGGAATGATCAGCCTGGAGTTGCGGGACTAAATTCCAATCATCATGAAAAAATCGACTCTTTACACGACTTTACAGTCATGCCCGCTGCAGACGTTACGCCGTTCGAATACACCCAGCAAACCGCCATCAATCATCAATACAGTTTGTCCATGAATTCAGCTTTCAGTAGTCAAGATGGTTTGGTCAAGATCGAATCATTGCCTTACGGAAATAACGAAGCTAGAACTCGCAGCTTTGTTGAGGTTGAATTGAGCGAAGGAAATCAGCACACTTGTAGCCATTGCGGTGTCAGCTTTACCAGAGCATCTTCGCTCGCTTCTCACGAAAAAGTTCACGCTTGTAAAAACTGGAGTATGCCCGTCGAGTGCGAATATTGCGACAAACAATTTCAGGATGGTAATTGTTTGGCCACTCATCAAACAACCTGTGCTAAAAAAGTCATGAAGAACAGCAGCGAGCATGGAATTCCTAATAGTAAATGGGGGAAGCACGCTTGCGCAGATTGTGGTAAAAAATTTACGACAAAACAGAAAATGTTCAGACACCAGTGGATCCATAGGAAAAAAACCCACTCCTGTGAAGTCTGTGGAGCTCAGTTTGAGAAGCAGCACGAATTAGACGAGCATAGATTATCCGCCCATCCTGGTGACTCGGCTTTTACCTGCGGCGAATGTGGAAAAAGCTTTGTATCCAGACAAGGACTCTGGGAACATGCGAGGACACATGCCGGTAGCCCCGCTCATTTTCACTGCGACGTTTGCTCGAAGACTTTCTCGTCCAGGCAGGGATATCTAATTCATCATAGAACTCACACCGGGGAAAGACCCTATGGGTgtaaattttgctggaaaGCATTCAGAGACGGAGGAACGCTTAGAAAACACGAACGTATTCATACCGGGGAAAGACCTCATGTTTGTCCGTTATGTTCTAGAGCTTTTAACCAGAAAGTTGTACTAAGAGAACACGTCAGATGGGTCCATGCAGCTGGTAAAAATGAGACTGAAGTTACCGGACCTCCTTTCAGATGCCCGCTGTGCGGAGCACTTAATCAAGACCGGGATGAACTCTGCGCACATATTGTTAAACACTCGGATCAAATGATTGCGGAAGCGAAAGCTAAGACGAACAATAATGCCTCCAAGCCTAAACCTACCAAGAAGAAATCTAAGGCTACCGCAAGCTCGGCGTCCCAGGGAAAACAGAATACTGCGAATCGATCAATTTCTAGAACGGAACAAAATGAAGCTTTGCTTTCTATTTCTGACGTGAATTTAAAGGCTAATGATAGCCTGCCGCAACTTATGACTGCTAATAAACCCACAGATGCGTCTTTGCTGCTCATCACAACTACCAAACGTAACGAAGTGCTGAGACTTAGTGCTTCGCAAGTTAAACAAAATGATTTACATTTAATAAACCAAGGGAAACAACAAAGCGATAATCATCTTCATATTCCTCAAATTGGACATAGAGAATCTATCAATTTGAGCACTGCTGAGGATGGGAATAAACAGGGATGCGATGTAAGAATGGTTTCCTCGGATCAACAAATTAGCGGAACAAGACAGAATAATGCTAACAACGCTATGCACTTGATGTCCTCATCGAAACAAAACAGCGCGGTACATTTAGTAGAATCGAGCAAACAGAATAACACTCTGCATCTGATTTCTAAACAGAATGAATCGCTGCCTGTATTGACAATACCAAATCctcaaaatcatgaaaatttctcCAGTCAAATAGCGCAGATGAACAACGTAGACATGCCCATGAACATGGTGACACATCATTCTTCTCAACATCACGGAGACAGAGCGAAAGTACAAATTTCTGTACAAAAATCGTTGATCCAAGATAGCAGAGGAGGAGGGGCTCAATCCAATATTGTCCAGAGTCAATATCAGCACAGGGAAAGCGACGACGGAGAAGAATCGGTCTGCGGTATGTGCGgcgaaaaatttataaataaaaactTATTAATGGAACATGTTAAAATTcatatataa
- Protein Sequence
- MEASENDEQRYVAFPLSTNDMHDSMQETIISHEEICEPVDGVDDCVLSAAGDSLPEVTVSEEVESRITEVQAAVEILGSNSDPEEDDDSSSVYPIYIKQEEPQPYTSGDDESMAVEALRQLGGMYPCSYNEKKISCPNCANLFTHIEMGKHHPNCAAVKLCCTTCGERFERKIDLNNHMVCHQVDRPHACRTCGNLFRSKASLQAHMAEVHQVERPHKCTICNSNFQRPSSLSNHMKIHTYVAGRAIMQTSNNVAQQTVENFRKWPENSGADSPSTSVPSSSVSSIPNYEVPQVHWSIPTYTFGNDQPGVAGLNSNHHEKIDSLHDFTVMPAADVTPFEYTQQTAINHQYSLSMNSAFSSQDGLVKIESLPYGNNEARTRSFVEVELSEGNQHTCSHCGVSFTRASSLASHEKVHACKNWSMPVECEYCDKQFQDGNCLATHQTTCAKKVMKNSSEHGIPNSKWGKHACADCGKKFTTKQKMFRHQWIHRKKTHSCEVCGAQFEKQHELDEHRLSAHPGDSAFTCGECGKSFVSRQGLWEHARTHAGSPAHFHCDVCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETEVTGPPFRCPLCGALNQDRDELCAHIVKHSDQMIAEAKAKTNNNASKPKPTKKKSKATASSASQGKQNTANRSISRTEQNEALLSISDVNLKANDSLPQLMTANKPTDASLLLITTTKRNEVLRLSASQVKQNDLHLINQGKQQSDNHLHIPQIGHRESINLSTAEDGNKQGCDVRMVSSDQQISGTRQNNANNAMHLMSSSKQNSAVHLVESSKQNNTLHLISKQNESLPVLTIPNPQNHENFSSQIAQMNNVDMPMNMVTHHSSQHHGDRAKVQISVQKSLIQDSRGGGAQSNIVQSQYQHRESDDGEESVCGMCGEKFINKNLLMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00939818; iTF_00938956; iTF_00060561; iTF_01413625; iTF_01414415; iTF_01412561; iTF_01411763; iTF_01303675;
- 90% Identity
- -
- 80% Identity
- -