Pate009446.1
Basic Information
- Insect
- Phymatocera aterrima
- Gene Symbol
- -
- Assembly
- GCA_963170745.1
- Location
- OY720661.1:6139134-6143735[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.13 14 6.8 2.9 1 23 313 335 313 335 0.97 2 19 0.032 3.4 8.7 0.5 2 23 370 391 369 391 0.94 3 19 0.23 24 6.1 0.2 10 23 447 460 446 460 0.95 4 19 0.082 8.6 7.5 0.4 2 23 464 485 463 485 0.95 5 19 2.2e-05 0.0023 18.7 1.8 2 23 531 552 530 552 0.97 6 19 0.00019 0.02 15.7 3.8 3 23 559 579 557 579 0.96 7 19 0.00053 0.056 14.3 0.8 1 21 585 605 585 609 0.92 8 19 0.0002 0.02 15.7 3.4 1 23 667 689 667 689 0.97 9 19 0.00019 0.02 15.8 4.8 1 23 720 742 720 742 0.97 10 19 0.00025 0.026 15.4 0.7 1 20 747 766 747 768 0.94 11 19 0.00043 0.045 14.6 0.5 2 23 779 800 779 800 0.97 12 19 1.2e-05 0.0012 19.6 0.7 2 23 839 860 838 860 0.97 13 19 2.3e-05 0.0025 18.6 1.6 1 23 865 887 865 887 0.95 14 19 8e-05 0.0084 16.9 1.5 1 23 893 915 893 915 0.98 15 19 4.1e-06 0.00043 21.0 0.4 1 23 931 953 931 953 0.95 16 19 3.4e-07 3.5e-05 24.4 0.6 1 23 959 981 959 981 0.99 17 19 3.7e-05 0.0038 18.0 0.2 1 23 987 1009 987 1009 0.97 18 19 0.00014 0.014 16.2 4.1 1 23 1015 1037 1015 1037 0.96 19 19 0.0096 1 10.4 0.4 1 20 1043 1062 1043 1064 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGAAGAGGTAAATACGTTGGAACCTCcgcgaaatgaagaaaatattacAACTGCTGTTGTAATATGTCGAGTTTGTTTGCTCGAAGGTGTAGAAATGAGAGATCtctattttgaaaatgagGTCGCATCATTATCCACAAAAGCTATGAGCTTCACTAACGCTAAGATGATGCCAGGAGATGGTTTACCTGGACAAGTATGCGCCTCTTGTGCTGAGAAATTAGATTCCGCCTATGAATTCAAGCTCCAAGTAGAACAGGCAGATGGAATTCTCAGAGAGAAATTTGTGTCTTTGAATATAAAGGAAGAATTATTCTTCAACGAAGTTGAAGTTGATTTGGAAACGAATCAAAATAACGAACAAAATATTGCAGAATTACCAGATACTAATGCCCAGCTGAATGCAGAGTCTGATCAAAAGAGTCCAGTCAATGAAGAAACAGAATCATCTACGCTATTGAAAGATAATTTGGCACTTTTGCAAGTTGAGAGATTGGCTAAAGCTGAACGAGAGCGTAAAGGAATGTCCAACACTATTGAAACTCTCGTAGAATCAATGGAGGAAATGCCATTGGATCCGGGTACAATCATTGCGCAGGAGCACGGCTATGGAGCACAGCAAAAGTTCATCAAAAAGGAAGATGTGAGTCCTAAGAGTCAGGAGTCTGTAAATTATGAAGAACCATGTAAAGAAATAAAACCAGAGGAAAATAATGGTAAAAATTCTGAtcagaatataataattgagaaTGTCAAGAGTCTGCGTCGTGTTGAATCGTCACACATGGAAACTCGTAAAAGTAAACGCAAATCTGTTCGAAAAGCGCCAATCCTCGATCATGATTCAGACGAAGAtaactattttgaaaatttgaatctaaGTTCTCGTCTCAAACAGAACCAGCCAGACAAAGCTGAGAAAGTTTATTACATGTGTTATATCTGCGATAAACATTTTTTGGCCAAGGGTGTATTGAAAGAACACATGCACTCTCATCAAGAAGTAAGAAAAGTTATGTCCCTAGTGAAGGTACCTGAAAAAAGCACAAAGGTTACTGCGTCTCCAACAAAACATTCTCCTTCTGGGAAACAGCCCAACAAATGTCCCTACTGTGGGAAAGAATATTTGTATGTTATTTCGTACAATAAGCATCTTAAGCaacatgaaaatgataaagaagTGCCAAAGACTGACCCCATGCCTTTAGAAGTATCTTTCCACGAGGATGACAACACCTTGGATTTTGATAATTACGATAATTCTTACGATTCAGATCCAGATTATAATGACGAGAGCGAGGAACATGCTCGTGAAAAATACGAACCTATATTCAACACTAAAACAGCACTCGAAAAACATATGATCAAACATGAAATTCTGAAGTGCAGTATTTGCAACAAAGAACTCGAAGGATTAGAAGCATTTAGAAATCATCGGTCTCAGCATGTTGCTGAGGGCGTCCTAACGGAAGAAGATCTAGAAGAAGATATTAAACAAGTCGTTCAATTGCAAGAGAGTACACAAGAAGACGAAGCGATTCAAGGACGGAGAAAAACTAGACATTCCGATGGTAAAGGCCTGCGATGTCCTAAATGTCCTATGGTATATTCTCACAAAAAATCATTATCCAGACATTTAGAAACCCACACGGGAACAAAATATGGATGTAAATCCTGCAGCCAACAATTCACTCGTAAAGATCACCTCAGGAGACACATGGAACAGCATGGTAGAATGAAGTCATTCAAATGTACCCAATGCAATAAAACTTTTGGTAACGAATTGACTCTGCGGAATCACTTGATAGCAACAAACCACAAGACTGTTATACGCGGTGAAGAATATGACCCTAATAAACGGCTGAAACGGGTCGCTGCTAAAGAGGCGCAAAAGATTATCGACAAAATTAAGACGGAAGATAACATGGATGAGGACAATAGCAGTGAAAGTGAAGAAACACCGCGAAAGAAATCTTACGATAAAAAAGAATACGAATGTGCAACATGTAACAGAAAATGCTCCTCTAAACAGTCTTTGACCAAACATATGGAATTGCATATTAAAGATGAAAAGGGAGATAAAAATATGAACCGTGGTTCCGATGACGATTCAGATTTTGACGGTGGTTTAGATTGGCCTATGGATAACCACGAATGTTCAACTTGCAAAAAAAGATATAGTACTAAAAAATCCCTTCTAAGACATCAACTTTTACATGAAGAACCAAACTTTGAATGCGATATATGTAATGTTAAATTTTATCGTAAAGACAAGCTGAAAGCGCATTATGACAAATGTTCAGAGAAGAATCCCGACCAAGTTAGAAAGTGTAATATCTGTGGCGATAGCTTTGAGAATAACGACATGCTCAAGGAACACAGAGCCAAACATGTTACAGAAGGGATTTTAACGGAAGAAGACTTACGAGATATAGAACCACAGGTCGAAGAGAGAAAACCtggtgaaaaaataacgagaaaaagaagaaccgaTATTGTTGGACTGGAATGCACGGAGTGTAACAAACGTTACACCTCACGAAAAGGATTGCTACGTCACATACAAGTTCATGAGGGTAAAAAATACCTCTGTGATATATGTCCAAAGAAATTCTATAGGCGAGAACATTTGAAGATACATGTGGCTAAGCACAATATGATAAAACCATACAAATGCGATCGTTGTACCAAACGTTTTGCCAAAGAAGAACAGCTCATAAATCATCTATCAAAACACgatagaaatttcaaaaaaaataaagaaacagaTAGCTCTAAAAGATTCTTGTGTGAAATATGTTCAAAGAGTTTTACACAGTCTACAACTCTCATAGCTCACTTGAGAGCTCACAAGGGAATAAAACCCTACGTTTGCGAAGTTTGCTCTCGACCTTTCACAACTAATGCTTATCTCAAAATGCACATGAGAACGCATACTCAAGAGAGACCTTATATTTGTCAGTATTGTTCCCGAGCTTTCGCTAGAGCTGATACTTTGGCAAATCATCTCACTTCACATACTGGTGAGGCAAAATATCATTGCAAATATTGTCCAAAAAATTTTAGGCGATTGAAATCATTGAAGGAACATGTCTTCATTCACACAGGTCAAAGACCTTACGCTTGTCCTACATGCGATCGTAGGTTCAATAACAATGGAAGTAGATATGCCCACAGTAAAAGATGCAAGCAAAATTTATTACAGAATCAAAGCAGACAACAAAATTCTAGTACTAATAATCAGGGTAGGATTCATATTGCTAATCAAATGCAAACAGTCAAACCACAAAATGTTAAAACAATCACAATTACCAGACAAGGAGAGAGCATCACTGCGCAACAAGTTATACAACATCAAGAAATTCTTATGCCTTTAATTCTACCTTTGACAGTAACTTTGGCCGATGTTGGCGAAGAAGTTATCCTTCCTGAGGGTACAAACATTTTTACTACCTCGTAA
- Protein Sequence
- MDAEEVNTLEPPRNEENITTAVVICRVCLLEGVEMRDLYFENEVASLSTKAMSFTNAKMMPGDGLPGQVCASCAEKLDSAYEFKLQVEQADGILREKFVSLNIKEELFFNEVEVDLETNQNNEQNIAELPDTNAQLNAESDQKSPVNEETESSTLLKDNLALLQVERLAKAERERKGMSNTIETLVESMEEMPLDPGTIIAQEHGYGAQQKFIKKEDVSPKSQESVNYEEPCKEIKPEENNGKNSDQNIIIENVKSLRRVESSHMETRKSKRKSVRKAPILDHDSDEDNYFENLNLSSRLKQNQPDKAEKVYYMCYICDKHFLAKGVLKEHMHSHQEVRKVMSLVKVPEKSTKVTASPTKHSPSGKQPNKCPYCGKEYLYVISYNKHLKQHENDKEVPKTDPMPLEVSFHEDDNTLDFDNYDNSYDSDPDYNDESEEHAREKYEPIFNTKTALEKHMIKHEILKCSICNKELEGLEAFRNHRSQHVAEGVLTEEDLEEDIKQVVQLQESTQEDEAIQGRRKTRHSDGKGLRCPKCPMVYSHKKSLSRHLETHTGTKYGCKSCSQQFTRKDHLRRHMEQHGRMKSFKCTQCNKTFGNELTLRNHLIATNHKTVIRGEEYDPNKRLKRVAAKEAQKIIDKIKTEDNMDEDNSSESEETPRKKSYDKKEYECATCNRKCSSKQSLTKHMELHIKDEKGDKNMNRGSDDDSDFDGGLDWPMDNHECSTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNDMLKEHRAKHVTEGILTEEDLRDIEPQVEERKPGEKITRKRRTDIVGLECTECNKRYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCDRCTKRFAKEEQLINHLSKHDRNFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHKGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNLLQNQSRQQNSSTNNQGRIHIANQMQTVKPQNVKTITITRQGESITAQQVIQHQEILMPLILPLTVTLADVGEEVILPEGTNIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00719614;
- 90% Identity
- -
- 80% Identity
- -