Pate005690.1
Basic Information
- Insect
- Phymatocera aterrima
- Gene Symbol
- baz-2
- Assembly
- GCA_963170745.1
- Location
- OY720659.1:6945180-6968962[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-21 5.7e-18 64.7 0.0 5 76 585 656 582 657 0.93 2 2 0.57 2.8e+03 -1.6 0.6 41 70 818 855 818 862 0.68
Sequence Information
- Coding Sequence
- ATGGAGAAAGAGAACTCCGGTGGAGGCGCGGACAACGCGCCGGGAGGCACCTCGACCTCCGCGTCCGCAGCTTCGGTTACATCTGCTTCAGCcgctgaaaaaattcaagctGATCAGGCGAACCCTCTGCTGGACCCGACGGCCCTCTTCGGTGCATACTGGCCGAGAGGGGATAGCACAACGTCGTCGCTGTTCAGTGGAATGCCAGGTGGTTACAGTTTGAGTCCACATCATTTGCCGTCTGCTTATGCTATACTTGGTCGAGGTGGTTCGGGGCAAGGGTATGGAGGTCACACACCGACCTCTGCGCCACCACCCCCACCCTATTCCCACAGCAGTCTAGGGACCTTGAGTGTGGCGGCAAGTCAAGCTGCCAGCTTAGGTATCAATCCAGCTAGTGCAGCATGGTGGACCATGGCCTCGCATCTTGCTGCACAAGACTACCTCGCGAGGTTACAAGGAGCTGCTGGTTTACCCGGCTTTCCTCCAAGCGCAGAGAGTTTACTGCCACCGTATCCTGGCTCGCTACTCAATCCACCGCCCATATCATCTCACAAGTCTAACAAATCCAAATCAAGTAAGAGCCATAAGACTCCTGCTAGTAGTAGTTCTTCATCAGCTAATCTGACGAGCAGTTTGGCTATGAGTCAAGCGCCAATTTCTCATCACAGTACCTCTACTAGCAGTACATCTAATTCACAGACAAATGTTGTCAGTGATCCCAGCAGTATATTGGGTGGCGTTCGGCTTCCACCTGATACGGAAATTATCAAGTATACGTCTAGTATAGTCGGACCAAAAATCCCAGGAACAACAAatcgaggaagaaagaagacaaTTTCATTGGATACGCCAAGCGTCAGTGTTCATCCGCCACCTATGCCTGCTATAAGCGCACATCAAACTAATTCGTCTGCCACTCTCATGTTAGATCCACGGAAATATAATCGGAGCGGGaaCGATTCCAATGACTATAGAGACTCGGTTGATAGGGTGGAAGTTATCAAACTACCTGCACATTCAACAAATGGATCTGTACTCTCGGCACCGCCGACTTATACAACCAGCAATACAAGTAATACCAGTGATACAGACACGCCCCTCAATCTTTCCCTGAAACCATCGTCAACATGCAGCAGTACACCTATAACTGGAAGTCAAGCCCTTAGTCAACTTTGTAATTTGAGTCAGTCTCTCCTAGCTTCTGATCGAACGTCACGAAGGAAGCCTGGCCCGAAACCAAGACGAGTGCCACAAAATTCAGTGCCCGTACCTGCCTCACCTAGTCCATCTCTTGCTCAGCTATTCGCTGCTGCAGATTCACCGCAAAGGCCGAGCAGCGGGAGCGAAGAGAATGATAGCATGACAGCCCACCACAAAGATGGACGACCTAGAAATCTCGGTCGCGGGGTATCCAAACCTAAGAAAAACACTGTTGCATCGTTATTGGCTCAAAGTAGAGCGCTCGGTATTAAACCCACACCTGCTTTAGATCCTAGTGCGCCATTGGCGCATCAGGTGTCTCTGCTTAGATCTAACATATTCGCTGCGCAGTTGCATGCAAGTACAGGATTGTTGGATGAGAAGATGCAGgagaaaatgaagaacaaacTGCTAGAAGTATCTGGCGAAGAGAGCAATATGGATGTGACGAGTGAAAGTGGCAGCAATACCGACGCTGTTACCGATaccgatgatgataatatcgAAGGAATACCTAGTGctaaaaaaaggaaactaaATCCGAGTGATAAAGATCTACAAGTTGCATTGGAACATGGGTGGAGACGTGAAACAGTTATTAAAGGACTTGGAAAAACAGGAGTGATCAAAGGAGATGTTACTTATTACAGTCCCTGCGGAAAAACATTCAGAAATACTCCTGAGCTTCTAAAATTTCTTGAACAACACAATTCCATGGAACTTTCTACAGCtaatttctcattctcatcACGACCACTGGTGGGCGAATTTTTACAACCAACTATGGGATTAGCTGAAGCTGAATTCGTCAGGCTAGGTTCTCAAGAAGTTGCAAGAAGATTAGAAGAACTGAGGGTAGCTGGCGGTCTTCGAGATGCTAGGCCAAACAATCAATATGAGAGAGATAAATTGGCTTATGCTAAGAAACTAGCTAAAGAAGAAGCTCAACGATATAAAGAGCAAGTTAGGCTAATGAAAGAACAAGAGAAGTCTGAGAGGCAGGAGGCCGTGAAACGGGAACGCGAACTTAGAAACCAGCAGCTGCTCGAAGGTCGCAAGCGCCTAGCGTTCACGATcaaacagaaaatgaagatcATCCAGGAGATCGAGTGTGGAAAGAGCAAAAGCGATGTGGCGCGAGAGCTAGGATTGGCTAGCAGTACCGTTGCAACAATTTGGAAGAATCGTGAAAGTATCACTGAAAGCTGGCGTAATAGAGACGTTATGCAGATGGAAGAtactgaattgaaaaaaatgacgtCTATTCAAGAGGTGCAACAGGTCCAGAAGCAAACGCAAAACCATGAGTTGCTGGAGGCGCGGAGAAAGAAGCAGGAGGAGATGGAGAAGTTTCGCATggaagaacaacaacgaaagcAGCAGGAGAGAGAGCTGAAACGCCAGCAAGCTGTGATGCTCAAAGAACAGATGTACATGCAGGAGCTGAGCAAGCAGCGCGAGATGCTCTACACCGTCGAGCTGGTATGTCTCATACCTAAACGTAGCTTTGAAACAATTATCATCCCACTTACTTAG
- Protein Sequence
- MEKENSGGGADNAPGGTSTSASAASVTSASAAEKIQADQANPLLDPTALFGAYWPRGDSTTSSLFSGMPGGYSLSPHHLPSAYAILGRGGSGQGYGGHTPTSAPPPPPYSHSSLGTLSVAASQAASLGINPASAAWWTMASHLAAQDYLARLQGAAGLPGFPPSAESLLPPYPGSLLNPPPISSHKSNKSKSSKSHKTPASSSSSSANLTSSLAMSQAPISHHSTSTSSTSNSQTNVVSDPSSILGGVRLPPDTEIIKYTSSIVGPKIPGTTNRGRKKTISLDTPSVSVHPPPMPAISAHQTNSSATLMLDPRKYNRSGNDSNDYRDSVDRVEVIKLPAHSTNGSVLSAPPTYTTSNTSNTSDTDTPLNLSLKPSSTCSSTPITGSQALSQLCNLSQSLLASDRTSRRKPGPKPRRVPQNSVPVPASPSPSLAQLFAAADSPQRPSSGSEENDSMTAHHKDGRPRNLGRGVSKPKKNTVASLLAQSRALGIKPTPALDPSAPLAHQVSLLRSNIFAAQLHASTGLLDEKMQEKMKNKLLEVSGEESNMDVTSESGSNTDAVTDTDDDNIEGIPSAKKRKLNPSDKDLQVALEHGWRRETVIKGLGKTGVIKGDVTYYSPCGKTFRNTPELLKFLEQHNSMELSTANFSFSSRPLVGEFLQPTMGLAEAEFVRLGSQEVARRLEELRVAGGLRDARPNNQYERDKLAYAKKLAKEEAQRYKEQVRLMKEQEKSERQEAVKRERELRNQQLLEGRKRLAFTIKQKMKIIQEIECGKSKSDVARELGLASSTVATIWKNRESITESWRNRDVMQMEDTELKKMTSIQEVQQVQKQTQNHELLEARRKKQEEMEKFRMEEQQRKQQERELKRQQAVMLKEQMYMQELSKQREMLYTVELVCLIPKRSFETIIIPLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01048905; iTF_01411507; iTF_01413177; iTF_01303355; iTF_01414174; iTF_00938691;
- 90% Identity
- iTF_00938691;
- 80% Identity
- -