Pate012351.1
Basic Information
- Insect
- Phymatocera aterrima
- Gene Symbol
- bab2
- Assembly
- GCA_963170745.1
- Location
- OY720663.1:3122882-3136071[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.6e-12 6.5e-09 35.8 0.0 1 39 381 420 381 424 0.90 2 4 4.6e-12 5.3e-09 36.1 0.1 2 39 436 473 435 476 0.94 3 4 1.7e-18 1.9e-15 56.7 0.0 2 45 491 535 490 535 0.97 4 4 9.7e-19 1.1e-15 57.4 0.1 1 42 542 584 542 585 0.97
Sequence Information
- Coding Sequence
- ATGAACAATCGGGATTGGGGAACGCATTACAGTGGAGGTATGGCGGGGCAGCACTACTGCCTTCGCTGGAACAATTACCAGTCGAACATGACTTCCGTGTTCCATCAACTGCTTCAGACCGAGGCATTTGTCGATGTGACTTTAGCCTGCAACGAGGCTTCCCTTAAAGCCCACAAGGTGGTTCTGTCGGCCTGcagttcgtattttcaaaaacttctaCTATCAAATCCGTGTAAACATCCGACCATAATTATGCCGCAGGATGTTTGTTTCACGGATCTTAAATTTATCATCGAATTTGTCTACAGGGGTGAAATAGATGTTTCACAGGCTGAACTTCAGTCGCTATTGAAAACTGCCGATCAATTGAAGATCAAAGGCCTCTGCGAAGTTCCGGAGAGTAAGGAGGGTCCGCCTTCAGTTAGTTTAAGTTCACCGCCTAGGGATAGGGATTCGGCGGCAACACCACGTTTGAATTATACTAAATTAAGAAGACAACATCATCCGAAATATAAAAGGCCTAGATTTGAGGCGAGGTCAGATTCgaggatatttgaaaaatacaaagaggAAGAAACGGAAGGATTTTGTCGAGGCGATAAAGAGAATCACAGGGACTGGCAGACTGAAGATGAAGAGTTCGGTGAGCCTACTATAGTTTTAGAATCGCGACAAAAGGATCTAACCAACggtaacacgaacaacaaTAACGGTGAGATGTTTTGTCACACAGGAATGGGACATTACGGTCATCATACGGATCCAGGAGTAGTAGACGTTGATTTACCACCCGAAACTCAACCCACACCTCCAAGCGCTACTCTTGTCGGTACAACAATAACGCATTTGAGAGATCCCGACCACCAGTCGACagaaatacaaaattgcgAAAGtgttaaaataaaatttgagaCACTTCACATGATGGACTCGACAGACACAATAGATATAGATAGTCATATGTCAGATCGAGCTAGCGTCAGTTCTAAAACAACAGGAGATAATGACAACATGATGATGATCACTCCAGAGCTACTTGGTCTCATGCCGTCCGGAAGCTCAGGACATTCCGATGCTGGGGATAACGGCAGGTCACATTCAGGACAAATTGGTTCTCATCATCATGGATCTAAGTCTTGGACTCAGGATGATATGGAAGCTGCTCTTGACGCTTTGAGAAATCACGATATGAGCCTCACCAAGGCTTCCGCTACTTTTGGAATTCCGTCGACAACTTTATGGCAGCGTGCTCATCGCCTTGGTATAGATACTCCAAAAAAGGATGGACCAACTAAATCGTGGAGCGATGAAAGTCTGAATAACGCGTTAGAGGCTCTTCGAACCGGTACAATTTCTGCTAATAAAGCATCCAAAGCTTTCGGCATACCTTCGAGTACTCTTTACAAAATTGCAAGAAGAGAGGGCATAAGATTAGCCGCGCCTTTTAATGCTAGTCCAACCACTTGGTCCCCGGCTGATCTCGATAGAGCTTTAGAAGCTATAAGGTCTGGACAAACTTCTGTTCAACGCGCTTCTACGGAATTTGGTATACCTACTGGAACTCTTTACGGTCGATGTAAAAGAGAAGGTATCGAATTAAGCAGAAGTAATCCTACTCCTTGGAGCGAAGACGCTATGACCGAAGCTCTCGAAGCCGTTAGAATGGGTCATATGAGCATAAATCAAGCCGCGATACATTATAATTTACCATATTCATCACTTTACGGACGATTTAAAAGAGGCAAATACGAAGAACCAGTAGGAAACGAGATGTCTCAAGATAGCAACAGTCTTCATTATCATAGCCCGAACCAAAATCATTCTTCTTCTGTACCCGATCAAATGCCGTACCAGGGTAGCTGA
- Protein Sequence
- MNNRDWGTHYSGGMAGQHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFTDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPESKEGPPSVSLSSPPRDRDSAATPRLNYTKLRRQHHPKYKRPRFEARSDSRIFEKYKEEETEGFCRGDKENHRDWQTEDEEFGEPTIVLESRQKDLTNGNTNNNNGEMFCHTGMGHYGHHTDPGVVDVDLPPETQPTPPSATLVGTTITHLRDPDHQSTEIQNCESVKIKFETLHMMDSTDTIDIDSHMSDRASVSSKTTGDNDNMMMITPELLGLMPSGSSGHSDAGDNGRSHSGQIGSHHHGSKSWTQDDMEAALDALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRMGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVGNEMSQDSNSLHYHSPNQNHSSSVPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_01413017;
- 80% Identity
- iTF_01200318;