Pxan008925.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Phylloecus xanthostoma
Gene Symbol
-
Assembly
GCA_030142555.1
Location
JARQTF010000421.1:105506-108222[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 4.9e-05 0.0033 17.8 3.6 1 23 265 287 265 287 0.98
2 12 0.0003 0.02 15.3 1.6 1 23 292 314 292 314 0.97
3 12 8.8e-05 0.006 17.0 0.8 2 23 324 345 323 345 0.97
4 12 0.0011 0.075 13.5 10.9 1 23 431 453 431 453 0.98
5 12 0.0046 0.31 11.6 1.7 1 22 459 480 459 483 0.90
6 12 3.3e-06 0.00022 21.5 0.5 1 23 522 545 522 545 0.94
7 12 4.4e-06 0.0003 21.1 1.2 1 23 578 600 578 600 0.98
8 12 0.00019 0.013 15.9 4.0 1 23 614 636 614 636 0.96
9 12 0.00018 0.012 16.0 4.7 1 23 642 664 642 664 0.98
10 12 0.0016 0.11 13.0 3.2 1 23 670 692 670 692 0.98
11 12 5.5e-05 0.0037 17.6 6.5 1 23 698 720 698 720 0.98
12 12 0.00025 0.017 15.5 0.3 1 21 726 746 726 747 0.93

Sequence Information

Coding Sequence
ATGGATACcgagaataaaaggaatgtTGCATCAGGTCAGACGGATGGACTTTGTCGAGTTTGTCTTGTGGCTGACCAAAATAaccaatgtatttttcaaataaacgaGAGTGACCCCAAAAACGAAAATGCACTCGACATGCCGCGGAAATTGTACATTTATGGAGGCATTGAGGTCCTGAAGGATGATGGACTACCTCCGTACATTTGCACTTGTTGTATTTCTAAGATTAATGCAGCTCATGAACTTCGAATGCAATGTCGGAGGGCAGATGAAGAGTTAAGGGAATTGCTTGGGAAACCATTCAGAAAATATACAACTGATAAGGTTAAAAAAGACCAATATAGTCAAACAGATGATTACTGTTCCGAAGGAATTATTAAGTTTGAAGGAGATTCGGTGGCAAATtgtggaaataataaaatctccaAAAGCATTCTCAATCACATTAATAGTGACGATAATATTTTAGAAAGTAATCATATCTCGACTAAGCATTTTGATAATGTTGAAGTCAGCAATACAGCAGCCTTGGCAGATGTTAAAGTAGAAACGATGCAGCTAGATAGAGGAAGGTTGCCATTCAAAAGGGAAACCTACCGTACAAGAAGAGTCTCGATGTTTAAAAGAATGACTTctatggaaaatttgaaaaatttcaaagagagacagagacagtatatcaaaaagaatataaatacaaagcaTGACTCTGCTGATGCAGATTTAGCATTGCCTGGTGTTATATATACCAGAGCGCAAAGAACAGCTAACATAGACTCTGACTTGGCTTACAAATGCAGCAAGTGTAACAGGTCTTATTCGAGTAAGAAATCCTTGGACAGGCACTCTTTGACACACgatgataaaaagtataagTGTGAGAAATGTGATAAGCAATTTTTTAGACTCGATAAGTTATTGGAGCATGGTAAATTGCACGAGTCCAAGGAGAAACCTAAGCCAGTGCGCTGCAGCATCTGTGATAAGAATTTTCGCAAGACAGACACAATGGTGAGACATTTGAACGTTCACAAAAAGGCAAATCCAAAAGAAGTGTTTGCTATCCTTAAAGAGATAAGGGATAAGAGAAAATTGGAGAATAGTTTAGATGTTTCTTGCAAGGAAGAtgtaaagaaggaaagaaatgaaaacgaaGAGAGTTGCCTTGGGAAAGAACTTAGAAAACGCGGGTCGACGTCTAACGAGGATCAGGATTACAATCCAGGTTCTTCGAATTCAGAATCCAACAGTGAAAGCGATTCTGATTCGGGTGATGATACTTCCTTTCATCGTTGTAAACACTGTACTAAGTGCTGCTCCTCGGAGAAGGCGTTACAGAGGCATTTACGCGTACatcaagagaagaagaagtatgTCTGCAACGTTTGCAACATGAAGTTCTTCAGAGAAGACAGATTAAAAAGTCATAGAGAGAGGTACAGTCATGACGAGGACAAAGTTTGCTTAGAATTACAGAAGCCACCTGATGATAAATCAGCAATCAAGTTAATAAACAGTTGGATTAGAGAAGAGTTGGACTCCGATAACGAAGGTAAGGGCTTTCCGTGCAAAATCTGTGGTAAATCATACGTGACAAAGAAGTCCTTACTAAAGCACAGAGCTAATGCTCACGAGAGCCAAGATGGTTGCTGCAGCAGCTGTGGACAGGATTGCAACTGCTCAGAGAAGTCGAAGGAGCCAGAGAAGCGAACTGAGAAGCTGAAACCATATACCTGCGAAGAATGCAATAAATCTTTCGAGAAGGAAACAAAACTCCAGAAACACGCTCGGATCCACGAGAGAGCAAAGGAGCAACAAGACTCAAACTTCAAGCGCTTTCTCTGTCATATCTGCAGCAAAACGTTCAGACAAAATACAGGACTGATGTTCCATATGAGGACGCACACGGGCTACAAACCACACGTGTGCAAATATTGTGGACGTGGTTTTACCTCCAATTCTAATTGCATAAATCATGAGAGGACGCATACTGGTGACAGACCATTCGTATGTCACTTTTGCAGTGCTGCATTCGCAAAGTCATGCACCCTCAAGGCCCATATAACCACGCATACTGGTGAAGCGAATTATCATTGCAAAACCTGTGGAAAATCCTTTAGAAGATTAAAATACTTAAAGGAGCATCGGTTTACGCATACAGGCGAAAAGCCGTATGCTTGTAAGATCTGTGGCACTGCCTATAGTCATTCCGGAAGTCTCTTTGTCCACGAGAAAAAGTGCAAGGCGCAGTACAACAGTTATCAAGCATTGCCTGCACAAAGTAcacaaaattattgtcaaacaCAAACAACCTGCGCCACTTCACCTGTAGTGACGCCGATAATATCAACTCTACCGACGTCTCATCATTTggtgaatattaataacagcTTGGGTGGACAAGCTAATAAAAGCTATATGGAGAGTATGCAAAGAATGAGTGCACATGCAGTGGCTGCAGCTGCAGTCGGAAATCCATCCTTGCATGTACACCCCAATACGGACGTCTCAGACATGGCATCTGCCGTCAGAAATTTTGCTATTATCGGGCAGATGTTTCATtcataa
Protein Sequence
MDTENKRNVASGQTDGLCRVCLVADQNNQCIFQINESDPKNENALDMPRKLYIYGGIEVLKDDGLPPYICTCCISKINAAHELRMQCRRADEELRELLGKPFRKYTTDKVKKDQYSQTDDYCSEGIIKFEGDSVANCGNNKISKSILNHINSDDNILESNHISTKHFDNVEVSNTAALADVKVETMQLDRGRLPFKRETYRTRRVSMFKRMTSMENLKNFKERQRQYIKKNINTKHDSADADLALPGVIYTRAQRTANIDSDLAYKCSKCNRSYSSKKSLDRHSLTHDDKKYKCEKCDKQFFRLDKLLEHGKLHESKEKPKPVRCSICDKNFRKTDTMVRHLNVHKKANPKEVFAILKEIRDKRKLENSLDVSCKEDVKKERNENEESCLGKELRKRGSTSNEDQDYNPGSSNSESNSESDSDSGDDTSFHRCKHCTKCCSSEKALQRHLRVHQEKKKYVCNVCNMKFFREDRLKSHRERYSHDEDKVCLELQKPPDDKSAIKLINSWIREELDSDNEGKGFPCKICGKSYVTKKSLLKHRANAHESQDGCCSSCGQDCNCSEKSKEPEKRTEKLKPYTCEECNKSFEKETKLQKHARIHERAKEQQDSNFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYNSYQALPAQSTQNYCQTQTTCATSPVVTPIISTLPTSHHLVNINNSLGGQANKSYMESMQRMSAHAVAAAAVGNPSLHVHPNTDVSDMASAVRNFAIIGQMFHS