Cido007371.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Calameuta idolon
Gene Symbol
-
Assembly
GCA_030142285.1
Location
JARQSV010000418.1:189368-192078[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 4.5e-05 0.0033 17.9 3.8 1 23 264 286 264 286 0.98
2 12 0.00029 0.021 15.3 1.6 1 23 291 313 291 313 0.97
3 12 8.6e-05 0.0062 17.0 0.8 2 23 323 344 322 344 0.97
4 12 0.0011 0.078 13.5 10.9 1 23 430 452 430 452 0.98
5 12 0.0045 0.33 11.6 1.7 1 22 457 478 457 481 0.90
6 12 8.2e-06 0.00059 20.2 1.0 1 23 520 543 520 543 0.93
7 12 2.5e-06 0.00018 21.8 1.3 1 23 576 598 576 598 0.99
8 12 0.00019 0.014 15.9 4.0 1 23 612 634 612 634 0.96
9 12 0.00018 0.013 16.0 4.7 1 23 640 662 640 662 0.98
10 12 0.0016 0.11 13.0 3.2 1 23 668 690 668 690 0.98
11 12 5.3e-05 0.0039 17.6 6.5 1 23 696 718 696 718 0.98
12 12 0.00025 0.018 15.5 0.3 1 21 724 744 724 745 0.93

Sequence Information

Coding Sequence
ATGGatgcagaaaagaaaaggagcgtTGAATCATCTCAAACAGATCGACTTTGCCGGGTCTGTCTTGTGGCCGACCAAAATAACCAATGCATTTTTCAAGTAAACGAGGATGACCCCAAAAGGAAGAATGCACTCGACATGCCGCAAAAATTGCAGATTTATGGAGGCATCGAGGTCATGAAGGATGATGGTATACCTTCATGGATTTGTAATAGTTGTATTTCTAAGATTAATGCAGCACATGAACTTAGAATGCAATGCCAGAGGGCGGATGAAAAGTTAAGGGAATTGTTTGGAAAACCTGTCAGAAAGAACGCCGCTGACAAGTTTCGAGCAGATCAATATTGTCAGACAGATGATTACTGTTCCGAGGGAGTTGTTAAGTTGGAACAAGATTCAATGGGAGGATATGGGAATAATAAATCCTCCAAAAGCATTCTAAATCGCATTAATACTAGTGATAATATAGAAAGTAATTATATCTCGACTAaccattttgataatattaaagtcAGTAATATTGCACTCTTGGCAGATGTTAAAGTAGAAATGACACAGCTACATAAAGAGAGATTGCCAATCAAAAGGGAAACCTACCGCACAAGGAGAGTCTCGATGTTTAAACGAATGACTTCTATGGAGAACTTAAAAAACTtcaaagagagacagaggcagTACATCAAAAAGAATGCAAATGCGAAGCATGACTCTGCTGATACAGATTCAGGATTGCCTGGTGTTACATATACCAGAGCGCAGAGAATTGCTAACATAGACTCTGACTTGGCTTACAAATGCACCAAGTGTAACAGGTCTTATTCAAGCAAGAAGTCTTTGGACAGGCACTCTCTAACACATGACGATAAAAAGTACAAGTGTGAGAAATGTGATAAGCAATTTTTTAGACTCGACAAGTTACTGGAACATGGTAAACTGCACGAGTCGAAGGAGAAACCTAAGCCGGTGCGCTGTAGCATCTGTGATAAGAATTTCCGCAAGACAGACACGATGGTGAGACATCTGAACGTTCACAAAAAGGCAAATCCAAAAGAAGTGTTTGCAATCCTTAAGGATATAAGGGATAAGAGAAAGTTGGAGAACAGTTTAGATATTCTTTTCGAGGAAGAAATCAAGAAGGAAACAAATCAAAATGAAGATAGTTGCCTTGGAAAAGAACTCAGAAAACGTAGCTCGACATCCAACGAGGATCAGGATTACAATCCAGATTCTTCGAATTCAGAGTCCAACAGCGAAAGCGATTCTGATTCAGGTGAAGATAACTCCTTTCATCGTTGTAAACACTGCACCAAGTGCTGCTCTTCGGAGAAGGCATTGCAGAGGCATTTACGCGTgcaccaagaaaaaaaatatgtctgcAACGTATGCAACATGAAGTTCTTTAGAGAAGACAGATTAAAAAGTCACAGAGAGAGGTACAGCCACGACGAGGACAAAGCTTGTTTAGAGTTACAGAAGCCACCCGATGATAAATCAGCAATCAAGTTAATAAACAGTTGGATCCGAGAAGAGCTAGACTCTGACAACGAGGGAAAGGGCTTCCCTTGCAAAATCTGTGGCAAGTCATACGTGACTAAGAAATCTTTACTAAAGCATAAAGCTAATACTCACGAGAGCCAAGAGGGTTGCTGTAGCAGCTGCGGGCAGGATTGCAACTGCTCACAGAAGTCGAAAGAGCCGGAGAAGCGAACGGAGAAGCTCAAACCATATACCTGCGACGAATGCAATAAATCTTTTGAGAAGGAAACAAAACTCCAAAAGCACGTCCGGATCCACGAAAGAGCAAAAGAGCAGCAAGACTCAAACTTCAAGCGCTTCCTCTGTCACATCTGCAGCAAGACGTTCAGGCAGAATACAGGACTGATGTTTCACATGAGAACGCACACGGGTTACAAGCCGCACGTGTGCAAATATTGCGGACGCGGTTTCACCTCGAATTCGAATTGCATTAATCACGAGAGGACGCACACAGGCGACAGGCCGTTCGTCTGTCACTTTTGCAGCGCTGCGTTCGCAAAATCCTGCACCCTTAAGGCGCACATAACTACCCACACCGGTGAAGCGAATTATCATTGCAAAACCTGCGGCAAATCATTTAGGAGACTGAAATATCTAAAGGAACATCGGTTCACGCACACTGGCGAAAAGCCGTATGCTTGCAAGATCTGCGGCACTGCCTATAGTCATTCCGGAAGTCTCTTTGTGCACGAGAAAAAGTGCAAGGCACAGTACAACAGTTACCAAACAGTGCCTCCGCAAAGCACACAAAATTACTGCCAAGCACAAACGGCCTGCGCCAATTCGCCCGCGGCGGCGCCAATAATATCAAATCTACCGGCATCTCATCATTTGGTAAATATCAACAACAGCTTGGGTAGTCAAGCTAACAAAAATTACATGGAGAGCATGCAAAGGATGAGCGCACATGCAGTGGCTGCAGCTGCAATCGGAAATCCATCCCTGCACATGCACTCCAATTCGGACGTCTCAGACATGGCGTCTGCAGTCAGAAATTTTGCTATTATCGGGCAGATGTTTCATTCgtaa
Protein Sequence
MDAEKKRSVESSQTDRLCRVCLVADQNNQCIFQVNEDDPKRKNALDMPQKLQIYGGIEVMKDDGIPSWICNSCISKINAAHELRMQCQRADEKLRELFGKPVRKNAADKFRADQYCQTDDYCSEGVVKLEQDSMGGYGNNKSSKSILNRINTSDNIESNYISTNHFDNIKVSNIALLADVKVEMTQLHKERLPIKRETYRTRRVSMFKRMTSMENLKNFKERQRQYIKKNANAKHDSADTDSGLPGVTYTRAQRIANIDSDLAYKCTKCNRSYSSKKSLDRHSLTHDDKKYKCEKCDKQFFRLDKLLEHGKLHESKEKPKPVRCSICDKNFRKTDTMVRHLNVHKKANPKEVFAILKDIRDKRKLENSLDILFEEEIKKETNQNEDSCLGKELRKRSSTSNEDQDYNPDSSNSESNSESDSDSGEDNSFHRCKHCTKCCSSEKALQRHLRVHQEKKYVCNVCNMKFFREDRLKSHRERYSHDEDKACLELQKPPDDKSAIKLINSWIREELDSDNEGKGFPCKICGKSYVTKKSLLKHKANTHESQEGCCSSCGQDCNCSQKSKEPEKRTEKLKPYTCDECNKSFEKETKLQKHVRIHERAKEQQDSNFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYNSYQTVPPQSTQNYCQAQTACANSPAAAPIISNLPASHHLVNINNSLGSQANKNYMESMQRMSAHAVAAAAIGNPSLHMHSNSDVSDMASAVRNFAIIGQMFHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01199614;
90% Identity
iTF_00252293;
80% Identity
-