Basic Information

Insect: Phylloecus linearis
Gene Symbol: -
Assembly: GCA_030142575.1
Location: JARQTE010000301.1:64959-67433[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 5.5e-06 0.00038 20.8 0.3 1 23 18 40 18 40 0.98

2 18 0.0062 0.44 11.1 3.1 1 23 46 68 46 68 0.97

3 18 0.081 5.7 7.6 0.1 1 21 74 94 74 97 0.83

4 18 3.8e-06 0.00027 21.2 3.9 1 23 103 126 103 126 0.96

5 18 5e-05 0.0035 17.7 2.2 1 23 143 166 143 166 0.97

6 18 0.0049 0.34 11.5 0.4 1 23 176 198 176 198 0.95

7 18 3.9e-07 2.8e-05 24.4 0.3 3 23 206 226 204 226 0.97

8 18 2.3e-05 0.0016 18.8 3.9 1 23 232 254 232 254 0.97

9 18 0.029 2.1 9.0 0.3 3 23 303 324 302 324 0.97

10 18 4.2e-05 0.003 18.0 0.7 1 23 330 353 330 353 0.98

11 18 0.68 47 4.7 0.2 2 23 359 381 358 381 0.95

12 18 0.0089 0.62 10.7 0.2 1 23 386 408 386 408 0.97

13 18 0.0092 0.64 10.6 0.5 2 23 415 437 414 437 0.94

14 18 0.00074 0.052 14.1 2.3 1 23 452 475 452 475 0.93

15 18 0.0023 0.16 12.5 0.1 1 23 486 508 486 508 0.95

16 18 0.0089 0.62 10.7 3.6 1 23 514 536 514 536 0.94

17 18 5.3e-07 3.7e-05 23.9 1.0 1 23 542 564 542 564 0.98

18 18 0.00053 0.037 14.5 0.2 1 21 570 590 570 591 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	5.5e-06	0.00038	20.8	0.3	1	23	18	40	18	40	0.98
2	18	0.0062	0.44	11.1	3.1	1	23	46	68	46	68	0.97
3	18	0.081	5.7	7.6	0.1	1	21	74	94	74	97	0.83
4	18	3.8e-06	0.00027	21.2	3.9	1	23	103	126	103	126	0.96
5	18	5e-05	0.0035	17.7	2.2	1	23	143	166	143	166	0.97
6	18	0.0049	0.34	11.5	0.4	1	23	176	198	176	198	0.95
7	18	3.9e-07	2.8e-05	24.4	0.3	3	23	206	226	204	226	0.97
8	18	2.3e-05	0.0016	18.8	3.9	1	23	232	254	232	254	0.97
9	18	0.029	2.1	9.0	0.3	3	23	303	324	302	324	0.97
10	18	4.2e-05	0.003	18.0	0.7	1	23	330	353	330	353	0.98
11	18	0.68	47	4.7	0.2	2	23	359	381	358	381	0.95
12	18	0.0089	0.62	10.7	0.2	1	23	386	408	386	408	0.97
13	18	0.0092	0.64	10.6	0.5	2	23	415	437	414	437	0.94
14	18	0.00074	0.052	14.1	2.3	1	23	452	475	452	475	0.93
15	18	0.0023	0.16	12.5	0.1	1	23	486	508	486	508	0.95
16	18	0.0089	0.62	10.7	3.6	1	23	514	536	514	536	0.94
17	18	5.3e-07	3.7e-05	23.9	1.0	1	23	542	564	542	564	0.98
18	18	0.00053	0.037	14.5	0.2	1	21	570	590	570	591	0.95

Sequence Information

Coding Sequence: ATGACCAAGCTGGTGGAGCACCTGAAGAACGTCCATGGAATCGAACGAGCTTTCAAATGCGACCAATGTGGCAAAGCATTTCGCAGTCCTATGAACATCGCGAGGCACAAGCTGATTCACACGGGAGTCAAGAATTTCGCATGCGACATTTGCAGTTACGCCTGCAATCAGAAGACGAACCTCGACTACCACAAGAAGAGGCACGCGCGAGATTATTCGTATAGGTGCGACCTCTGCGACAAGGGCTTCCTGGCCAGGTCGGAATTTCTCGAGCATCGCGATGCGGCCCACACTGGTCGCAAGTCTCACCGATGCGATCATTGCGACAAGTCTTACCCGTACAAGAGCAATCTCAACGTCCACGTGAGACTTCGGCATCCGGAGCACGTGCACCTTCCGCTCTCGAGGAAGACGGAAGGCGAGAGGCACCAATGCGATATCTGCTCGGAGAGCTTTGCGTACAAGCGACTTCTGGAGCGACACTCGAAGACGAGTCACGGTGTCCTCTCTCGGAAGGAGAGGAACTTTCTTTGCGAGCTCTGCGGCACTCGACTCTCCTCGAGAAGCATTCTCATGGCTCACAGAAGGTCCCACACGGGCGAGAGACCGATCATTTGCGAACTGTGCGGCAAGGGCTTCGTCACCAGGGAAAATCTCAAGATACATCGGCGCACCCACACTGGCGAGAAACCGCACACCTGCGTCCATTGCGGAAAGGGATTCACGCAGAGGACCTCCCTGGTCCTTCATCTTAGATATCACACGGGCCAACGGCCTTATCGTTGCACCACCCGATGGAGCAACAATCACGAGGAGTTTGACGATTCTCAAGACTTTAAGATCAAGACGGAAGACACTGAGAGGGAAGTGGATTCGGCGTCCAAATCGGAGAGCAATGAAAAGGCCTGCGAAATATGCAATGAAAAGTTCCACTTTGTGACGCGGCTAGTGGCGCACCTCAGGATAGCCCATGGGATTCACAGGCCGTTCAAGTGTCCAACCTGCGCCAAGACCTATCCCCAGCAGTTCATGCTGAACGCTCACGTCAAGAAGTCCCACACTCCGAAGACCGTGCCCTGCTCGCAATGCGAGTTCATGGGCGTCTCGACGACGGACGTCGAGCGACACAAGAGACGCATCCATAAGGAGGTCAAGTTCACCTGCGAGATCTGCAGCGAGAGCTTCCTCGAGAAAGCAGCCCTGATCACGCACACAACGATGCACAACTTCATGCAGTACCAGCAGTGCAACGCCTGCGGCAGCACCTTCAACGATGTCTACTCGCTGAAGGAGCACAATCGGCTCTATCATTTCAGTGGGGATTCCACGAGAAAGCCCGAGGAAGTGCTCGAGCACAAGTGCGACATTTGCGGCAAACTCTATAAATATAAGTCGGTTCTGAAGCAGCACAAGGTCAAGGCCCATGGTGACGCACCGAATTACGAGCGACGCCGATACCTTTGCGCCCTCTGCGGCAAGGAACTCAAAACGGCTAAGGGCCTCGAAATTCACAATAGGTCCCATACTGGCGAGAAACCTTACACCTGCGAGGTTTGCGGTAAGTGCTTTGCCTGCGAGACCCTCCTCAGGACTCACAACGTCACGCACACCGGCGAGCGCAAGTATTCCTGCGAGCAATGCGGCAAGGCGTTCACTCAGAGGTCGACTCTGGTAGTTCACAAGCGGTACCACACCGGCGAGAGACCCTACGTCTGCCCCAGGTGCACCAAGGGATTTGTCACTCGTACCGTTCTCAATACTCATCTTAAGTCCTGTCGTTGA
Protein Sequence: MTKLVEHLKNVHGIERAFKCDQCGKAFRSPMNIARHKLIHTGVKNFACDICSYACNQKTNLDYHKKRHARDYSYRCDLCDKGFLARSEFLEHRDAAHTGRKSHRCDHCDKSYPYKSNLNVHVRLRHPEHVHLPLSRKTEGERHQCDICSESFAYKRLLERHSKTSHGVLSRKERNFLCELCGTRLSSRSILMAHRRSHTGERPIICELCGKGFVTRENLKIHRRTHTGEKPHTCVHCGKGFTQRTSLVLHLRYHTGQRPYRCTTRWSNNHEEFDDSQDFKIKTEDTEREVDSASKSESNEKACEICNEKFHFVTRLVAHLRIAHGIHRPFKCPTCAKTYPQQFMLNAHVKKSHTPKTVPCSQCEFMGVSTTDVERHKRRIHKEVKFTCEICSESFLEKAALITHTTMHNFMQYQQCNACGSTFNDVYSLKEHNRLYHFSGDSTRKPEEVLEHKCDICGKLYKYKSVLKQHKVKAHGDAPNYERRRYLCALCGKELKTAKGLEIHNRSHTGEKPYTCEVCGKCFACETLLRTHNVTHTGERKYSCEQCGKAFTQRSTLVVHKRYHTGERPYVCPRCTKGFVTRTVLNTHLKSCR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00252249;
90% Identity: iTF_01199569; iTF_00770532; iTF_00252249; iTF_01473347; iTF_00254513;
80% Identity: -