Basic Information

Insect: Calameuta pallipes
Gene Symbol: -
Assembly: GCA_030142375.1
Location: JARQSW010000427.1:74873-78369[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 4.6e-05 0.0036 17.9 0.2 1 23 18 40 18 40 0.97

2 18 0.00054 0.042 14.5 3.3 1 23 46 68 46 68 0.98

3 18 0.083 6.5 7.6 0.1 1 21 74 94 74 97 0.83

4 18 1.9e-05 0.0015 19.1 6.1 1 23 103 126 103 126 0.96

5 18 0.00016 0.013 16.2 3.7 1 23 143 166 143 166 0.97

6 18 0.0036 0.29 11.9 0.3 1 23 175 197 175 197 0.96

7 18 2.7e-07 2.1e-05 24.9 0.3 3 23 205 225 203 225 0.97

8 18 3e-05 0.0024 18.5 3.0 1 23 231 253 231 253 0.96

9 18 0.03 2.3 9.0 0.3 3 23 302 323 301 323 0.97

10 18 4.3e-05 0.0034 18.0 0.7 1 23 329 352 329 352 0.98

11 18 0.26 21 6.1 0.1 2 23 358 380 357 380 0.95

12 18 0.048 3.8 8.4 0.1 1 23 385 407 385 407 0.94

13 18 0.0093 0.73 10.6 0.5 2 23 414 436 413 436 0.94

14 18 0.0014 0.11 13.2 2.4 1 23 451 474 451 474 0.93

15 18 0.0023 0.18 12.5 0.1 1 23 485 507 485 507 0.95

16 18 0.009 0.71 10.7 3.6 1 23 513 535 513 535 0.94

17 18 5.4e-07 4.2e-05 24.0 1.0 1 23 541 563 541 563 0.98

18 18 0.00054 0.042 14.5 0.2 1 21 569 589 569 590 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	4.6e-05	0.0036	17.9	0.2	1	23	18	40	18	40	0.97
2	18	0.00054	0.042	14.5	3.3	1	23	46	68	46	68	0.98
3	18	0.083	6.5	7.6	0.1	1	21	74	94	74	97	0.83
4	18	1.9e-05	0.0015	19.1	6.1	1	23	103	126	103	126	0.96
5	18	0.00016	0.013	16.2	3.7	1	23	143	166	143	166	0.97
6	18	0.0036	0.29	11.9	0.3	1	23	175	197	175	197	0.96
7	18	2.7e-07	2.1e-05	24.9	0.3	3	23	205	225	203	225	0.97
8	18	3e-05	0.0024	18.5	3.0	1	23	231	253	231	253	0.96
9	18	0.03	2.3	9.0	0.3	3	23	302	323	301	323	0.97
10	18	4.3e-05	0.0034	18.0	0.7	1	23	329	352	329	352	0.98
11	18	0.26	21	6.1	0.1	2	23	358	380	357	380	0.95
12	18	0.048	3.8	8.4	0.1	1	23	385	407	385	407	0.94
13	18	0.0093	0.73	10.6	0.5	2	23	414	436	413	436	0.94
14	18	0.0014	0.11	13.2	2.4	1	23	451	474	451	474	0.93
15	18	0.0023	0.18	12.5	0.1	1	23	485	507	485	507	0.95
16	18	0.009	0.71	10.7	3.6	1	23	513	535	513	535	0.94
17	18	5.4e-07	4.2e-05	24.0	1.0	1	23	541	563	541	563	0.98
18	18	0.00054	0.042	14.5	0.2	1	21	569	589	569	590	0.95

Sequence Information

Coding Sequence: ATGACCAAGCTGGTGGAGCACTTGAAGAACGTCCATGGAATCGAACGAGCTTTCACGTGCGATCAGTGTGGACAAGCGTTTCGCAGTCCAATGAACATCGCGAGGCACAAGCTGATCCACACGGGGGTCAAGAGTTTCGTGTGCGACATATGCAATTACGCCTGCAATCAGAAGACGAACCTCGATTACCACAAGAGGAGGCACGCACGGGAGTATTCGTACAGGTGCGATCTCTGCGACAAGGGTTTCTTGGCCAGGTCGGAATTCCTAGAGCATCGGGACGCCGCCCACACGGGTCGCAAACCTCACCGATGCGACCATTGCGACAAGTCTTACCCGTATAAGAGCAACCTCAACGTTCACGTGAGACTCTGTCATCCGGAGCAGGTGCAGCTTCCTCACTCGAGGAAGATAAAAGGCGAGAAGCACCGATGCGACGTCTGCTCGGAAACCTTCCGGTACAAGCGGCTCCTCGAGCGGCACTCGAAGACGAGTCACGGTGTCTCGAAGAACGAGCGGAACTTCCTTTGCGAGCTCTGCGGGACTCGACTCTCCTCGAGGAGCATCCTGGTGGCTCACAGAAGGACTCACACGGGCGAGAGGCCGATCATTTGCGAAATGTGCGGCAAGGGCTTCGTCACCAGGGAGAATCTCAAGATTCATCGACGCACCCACACTGGCGAGAAGCCACACATCTGCGTCCATTGCGGGAAGGGATTTACGCAAAGGACCTCCCTCGTCCTTCATCTAAGATATCACACGGGCCAGCGGCCTTATCGTTGCGTCACCCAATGGAGCAACAATCACCAGGAGTTTGACGATTCTCAAGACCTTAAGATCAAGACGGAAGACATCGAGAGGGAATTGGATTCGGAGCTCAAATCGGAGAGCAACGAAAAGGCTTGCGAAATATGCAATGAAAAGTTCCACTTCGTAACGCGTCTGGTGGCGCATCTCAGGATCGCCCATGGGATTCATAGGCCGTTCAAGTGTCCAACCTGCGCCAAGACCTATCCGCAGCAGTTCATGCTGAACGCTCACGTTAAAAAGTCCCACACTCCGAAGACGGTGCCCTGCTCGCAGTGCGAGTTCATGGGCGTCTCGGCGACGGACGTCGAGCGGCACAAGAGACGCGTCCACAAGGAGGTCAAGTTCACCTGCGAGATCTGCAGCGAGAGCTTCCTCGAGAAGGCGGCCCTGATCGGCCACACGACGATGCACAATTTCATGCAGTACCAGCAGTGCAACGCCTGCGGCAGCACCTTCAACGACGTCTACTCCCTGAAGGAGCACAATCGACTCTATCATTTCAGCGCGGACTCGATGACGAAGCACGAGGAAGCGCCCGAGCACAAGTGCGACGTCTGCGGGAAGCTCTACAAGTACAAGTCGGTCCTGAAGCAGCACAAGGTCAAGGCCCACGGCGACGCGCCGAACTACGAGCGACGCCGATACCTCTGCGCCCTCTGCGGCAAAGAGCTCAAGACGGCCAAGGGTCTCGAAATTCACAACAGATCGCACACTGGCGAGAAGCCCTACACCTGCGAGGTCTGCGGCAAGTGCTTCGCCTGCGAGACGCTCCTCAGGACTCACAACGTGACGCACACCGGGGAGCGCAAGTATTCCTGCGAGCAATGCGGCAAGGCCTTCACTCAGAGGTCGACCCTGGTCGTTCACAAGCGATATCACACCGGCGAGAGGCCCTACGTCTGCCCCAGGTGCACCAAGGGATTCGTCACTCGCACCGTTCTCAATACTCATCTCAAGTCCTGTCGTTGA
Protein Sequence: MTKLVEHLKNVHGIERAFTCDQCGQAFRSPMNIARHKLIHTGVKSFVCDICNYACNQKTNLDYHKRRHAREYSYRCDLCDKGFLARSEFLEHRDAAHTGRKPHRCDHCDKSYPYKSNLNVHVRLCHPEQVQLPHSRKIKGEKHRCDVCSETFRYKRLLERHSKTSHGVSKNERNFLCELCGTRLSSRSILVAHRRTHTGERPIICEMCGKGFVTRENLKIHRRTHTGEKPHICVHCGKGFTQRTSLVLHLRYHTGQRPYRCVTQWSNNHQEFDDSQDLKIKTEDIERELDSELKSESNEKACEICNEKFHFVTRLVAHLRIAHGIHRPFKCPTCAKTYPQQFMLNAHVKKSHTPKTVPCSQCEFMGVSATDVERHKRRVHKEVKFTCEICSESFLEKAALIGHTTMHNFMQYQQCNACGSTFNDVYSLKEHNRLYHFSADSMTKHEEAPEHKCDVCGKLYKYKSVLKQHKVKAHGDAPNYERRRYLCALCGKELKTAKGLEIHNRSHTGEKPYTCEVCGKCFACETLLRTHNVTHTGERKYSCEQCGKAFTQRSTLVVHKRYHTGERPYVCPRCTKGFVTRTVLNTHLKSCR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00252249;
90% Identity: iTF_01198833;
80% Identity: -