Plin003513.1
Basic Information
- Insect
- Phylloecus linearis
- Gene Symbol
- -
- Assembly
- GCA_030142575.1
- Location
- JARQTE010000244.1:3923-4495[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-10 1.3e-07 31.2 0.0 3 37 32 65 30 72 0.87 2 2 1.9 2.3e+03 -1.6 0.0 16 23 151 159 146 160 0.73
Sequence Information
- Coding Sequence
- ATGTGTTCAAAAATAACAAGGAAGACTCATGTATTAGTTAAACATTCAGGAAAAACTAAACAGAATAAAGTTAGGAGGAAGAATTATTCTGCTGAAAACGTTGACAATGCTTTAAAAGCTGTGGATAATGGCATCTCTATTAGAAAAGCTGCTGCTGCATATGGAATCCCAGTAGCCACacttgcaagaaaaaaaaatcatcctgttaaattgaaaataaaaccagGACCCGATACAGTTCTCTCAAAAGTTATCGAGGAAGACATTGTTAATTGGATTCTGTACAAGGCTGAACGAGGTCAGCCAGTTAACAGAAACGAACTCCTAGATTCTGTACAGTTTTATGTCAAAATGAAAGGACTAGCTACACCATTTCTTAACAACCGTCCTGGGCGACATTGGTTTCAAGGATTCAAGAAACGTCATCCCAAGATTAGCATTAGAAAACCACAGCATCTCAGCCTTAGTAGAGCAAGTGTTACTCGAGAAGATTTAAAAGAGTGGTTTGAGGAGCAAGcaaactatttaaaaaaaaaacaatttattggACATTTGTCCAAgcagaatttttaa
- Protein Sequence
- MCSKITRKTHVLVKHSGKTKQNKVRRKNYSAENVDNALKAVDNGISIRKAAAAYGIPVATLARKKNHPVKLKIKPGPDTVLSKVIEEDIVNWILYKAERGQPVNRNELLDSVQFYVKMKGLATPFLNNRPGRHWFQGFKKRHPKISIRKPQHLSLSRASVTREDLKEWFEEQANYLKKKQFIGHLSKQNF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00294389;
- 90% Identity
- iTF_00294389;
- 80% Identity
- -