Cpar003860.1
Basic Information
- Insect
- Cephus parvus
- Gene Symbol
- -
- Assembly
- GCA_030142435.1
- Location
- JARQTA010000423.1:5134-5661[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.6 4.2e+03 -2.1 0.0 34 44 21 32 17 33 0.78 2 3 1.3e-10 1.5e-07 31.3 0.1 3 37 32 65 30 72 0.87 3 3 2.3 2.6e+03 -1.4 0.0 16 23 151 159 146 160 0.73
Sequence Information
- Coding Sequence
- ATGTGTTCAAAAATAACAAGGCAGACTCATGTATTAGTTAAACATTCAAGAAAAACTAAACAGAATAAAGTTAAAAGGAAGAATTATTCTGCTGAAAACGTTGACAATGCTTTAAAAGCTGTGGATAATGGCATCTCTATTAGAAAAGCTGCTGCTGCATATGGAATCCCAGTAGCCACacttgcaagaaaaaaaaatcatcctgttaaattgaaaataaaaccagGACCCGATACAGTTCTCTCAAAAGTTATCGAGGAAGACATTGTTAATTGGATTCTGTACAAGGCTGAACGAGGTCAGCCAGTTAACAGAAACGAACTCCTAGATTCTGTACAGTTTTATGTCAAAATGAAAGGACTAGCTACACCATTTCTTAACAACCGTCCTGGGCGACATTGGTTTCAAGGATTCAAGAAACGTCATCCCAAGATTAGCATTAGAAAACCACAGCATCTCAGCCTCAGTAGAGCAAGTGTTACTCGAGAAGATTTAAAAGAGTGGTTTGAGGAGCAAgcaaactattaa
- Protein Sequence
- MCSKITRQTHVLVKHSRKTKQNKVKRKNYSAENVDNALKAVDNGISIRKAAAAYGIPVATLARKKNHPVKLKIKPGPDTVLSKVIEEDIVNWILYKAERGQPVNRNELLDSVQFYVKMKGLATPFLNNRPGRHWFQGFKKRHPKISIRKPQHLSLSRASVTREDLKEWFEEQANY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01198588;
- 90% Identity
- iTF_01198588;
- 80% Identity
- -