Pful023872.1
Basic Information
- Insect
- Phragmatobia fuliginosa
- Gene Symbol
- -
- Assembly
- GCA_932526455.1
- Location
- CAKOBD010000137.1:1348504-1351046[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00027 0.024 15.8 0.7 3 23 70 91 69 91 0.97 2 11 0.71 63 5.0 0.1 2 23 116 138 115 138 0.93 3 11 4.7 4.2e+02 2.4 0.5 5 23 165 183 163 183 0.83 4 11 0.00061 0.054 14.7 1.1 1 21 187 207 187 208 0.96 5 11 0.21 19 6.7 0.3 1 23 249 272 249 272 0.94 6 11 0.26 23 6.4 0.3 2 23 298 320 297 320 0.95 7 11 0.00095 0.085 14.1 0.6 2 23 344 365 343 365 0.95 8 11 0.00047 0.042 15.0 0.0 1 23 369 392 369 392 0.97 9 11 0.4 35 5.8 0.6 1 23 396 419 396 419 0.96 10 11 7.9e-05 0.007 17.5 2.0 1 23 458 481 458 481 0.97 11 11 0.00014 0.012 16.7 0.3 1 23 491 514 491 514 0.96
Sequence Information
- Coding Sequence
- ATGGTTGCCATGCAAGTGTTATTCCTAGCAACCTGTGAAGTTTTGACAGGAGGGACCGCATTGGGAATTCACGGACGTAGGAACAGTGCGAATGAACCAAAAAAGAAAATTGTACTTATATACCAGCCGCCACAGCGGCGAAACGCTGAACTTATACTTACTTGTTCTACCGCGTACCCCTTTAAAACTAGATTTAGTCAAATACTCTGTGCATATTGCCACGAAGAATATAACACCCTCTCAGATTTGAGATACCATATGAAAATAGAACATATTAACTCTGACTTTAAAAATGTATTTTACAGAGCTAAAGATAATCTCATTAAAATTGATATAACCAATTTGAAATGTACCATTTGCACTCAGGAGATTCAAGATATCGACGGTCTAATGAATCATTTATATAGCGTACACAATAAACCTGTCAAATTCAATGCTCGTTATGGCGTCCTGCCTTACAAACAAACTTCTGAAAATCAGTGGCTTTGCATATACTGCAATAAATTATTAAATGCATTTATTAATTTTAAACGACATATTGTTACACATTTTATGAATTATTCATGTGACAAATGCGGCACGATGTTTGTGTCCGACCACGCGTTAAGAGACCATCATCGCCAGGTTAAATGTTTAAGGACTGCTTATAAGGCTCGTAATGGACGGGTCTTGAAGCCTAGAACAAATGCAGAAATAATTCTCCAATGTTCTACGGCATCCCCGTTTAGAACTTGGAAAAGTAATTTCAACTGCGTATTTTGTAGAGTACAAAGTAATGACCCAAGTAGTTTGAGGCTACATGTGGTTACAACTCATGCCAATTACGACGTCAAAGCAGCCTTTTATAAAAAACTAGGCAAAGATTTTCTAAATATTGATATCACCGATCTTCAATGCAAACTTTGTTTTATGCCAATAGACACTTTTGAAAATCTTATTTATCACTTAAAGAACGATCACCAACAACCCGTAAATGATGATGCTCAGTTAGGTGTCCTGCCTTTTCGATTAAATGATGGATCAATATGGAAGTGCACAATATGTCCAAACGAATTCAAAGACTTTGTGTCGTTAAAGAAACATACTTCGGAACATTTCCAAAATTACGTTTGTGACACATGCGGTGCAGGTTTTATTACGGAATCTGCAATGATAGCTCATACAAAAATACCTCACGAAAATAAGTACAACTGCAGTCGTTGTATTGCTACGTTTTCTTCGCTGGACGAAAGAAATTTACATGTAAAAACTCAACATACCTCTACGCCTTACATGTGCATGTATTGTAAAGAGAAACCGCGCTTCGCGAACTGGGAGATTCGAAAAAAACATTTGATGGCAGTTCATAATTACAAAACTGGAGCTGATAAGTACGAATGTACGACATGTCAGAAGTCTTTCAAGACGAGATCTGGAAAGTACAACCACATGGCGAGAGTGCATAGAATAAAGAAAGATTCAGAACTCAATTACCCTTGTCCAAGTTGCCCAAAAGCATTCACAACTAAATTATTCTTGGACAAGCATATTGCCAAAAAGCATTTTGATGTGTGA
- Protein Sequence
- MVAMQVLFLATCEVLTGGTALGIHGRRNSANEPKKKIVLIYQPPQRRNAELILTCSTAYPFKTRFSQILCAYCHEEYNTLSDLRYHMKIEHINSDFKNVFYRAKDNLIKIDITNLKCTICTQEIQDIDGLMNHLYSVHNKPVKFNARYGVLPYKQTSENQWLCIYCNKLLNAFINFKRHIVTHFMNYSCDKCGTMFVSDHALRDHHRQVKCLRTAYKARNGRVLKPRTNAEIILQCSTASPFRTWKSNFNCVFCRVQSNDPSSLRLHVVTTHANYDVKAAFYKKLGKDFLNIDITDLQCKLCFMPIDTFENLIYHLKNDHQQPVNDDAQLGVLPFRLNDGSIWKCTICPNEFKDFVSLKKHTSEHFQNYVCDTCGAGFITESAMIAHTKIPHENKYNCSRCIATFSSLDERNLHVKTQHTSTPYMCMYCKEKPRFANWEIRKKHLMAVHNYKTGADKYECTTCQKSFKTRSGKYNHMARVHRIKKDSELNYPCPSCPKAFTTKLFLDKHIAKKHFDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00172173;
- 90% Identity
- iTF_01152543;
- 80% Identity
- -