Pful015152.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Phragmatobia fuliginosa
Gene Symbol
-
Assembly
GCA_932526455.1
Location
CAKOBD010000086.1:6110005-6123421[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.0074 0.65 11.3 3.6 1 21 197 217 197 218 0.96
2 20 4.6e-05 0.0041 18.2 5.1 2 23 232 253 231 253 0.96
3 20 2.6e-05 0.0023 19.0 6.8 1 23 259 281 259 281 0.98
4 20 1.7e-07 1.5e-05 25.9 3.2 1 23 287 309 287 309 0.98
5 20 3.7e-05 0.0033 18.5 7.0 1 23 315 337 315 337 0.98
6 20 2.1e-05 0.0019 19.3 10.7 1 23 343 365 343 365 0.98
7 20 1.2e-05 0.0011 20.0 4.7 1 23 371 393 371 393 0.98
8 20 9.1e-05 0.008 17.3 8.7 1 23 399 421 399 421 0.98
9 20 4.3e-05 0.0038 18.3 4.5 1 23 427 449 427 449 0.98
10 20 0.0046 0.41 11.9 6.3 1 23 455 477 455 477 0.98
11 20 2e-07 1.8e-05 25.6 2.9 1 23 483 505 483 505 0.98
12 20 1.9e-06 0.00017 22.6 2.8 1 23 511 533 511 533 0.98
13 20 1.9e-06 0.00017 22.6 2.8 1 23 539 561 539 561 0.98
14 20 0.045 4 8.8 6.1 1 23 567 589 567 589 0.98
15 20 0.00042 0.037 15.2 2.2 1 23 595 617 595 617 0.98
16 20 2.1e-05 0.0019 19.3 10.7 1 23 623 645 623 645 0.98
17 20 0.00056 0.05 14.8 5.1 1 23 651 673 651 673 0.98
18 20 2.4e-08 2.1e-06 28.5 4.9 1 23 679 701 679 701 0.99
19 20 1.9e-06 0.00017 22.6 2.8 1 23 707 729 707 729 0.98
20 20 5.1e-06 0.00045 21.2 9.2 1 23 735 757 735 757 0.98

Sequence Information

Coding Sequence
ATGTATAACCTTTCGATGTGCCGTGTCTGTTTAGAAGAAGACTTTCGACTGATTTCGATTGTCGGAACTCATCTACAAGAAATGTATGAGTCTCTTGTTTTGAGGCCATTGGAAACTACAGATGGCAAGCCTATGGTAATATGCTATATATGTCGCGCAAGGCTCGAGAACTGCTATGAGTTGAGGAAGAGCTGTCTCCAGAGCGAGGAGCTGTTCACACAGATGCTGAACTCTGCTGAGTCCGAACAAGTGCAGCTACACGCAACACACAGTAAGAAGAAACTCACCATGCACAATGTCATACACTTGAGCGTGGGACATGAACTGGGGATGGATGCAGACAATTCTGGTGTGGAGGCTCTCAAGTGTGAAGTGAAAGATGAACCATATGATGGGGAAGGTGACTCTACACCGAAGGAACCTACACAAGACGCGCAGAAGAGTTCTGAAGAGTTAACCACTCGCAACATGAATGAACATGAACTCATCCAGGACACTTCTAAAGAACTTCACGAAGTTACTGCTGCATACGTAACAGATGACAATAAAGAGATACCTACAAGTATACCGCACATCAATCGTGTACAATATACGTGCGACACGTGtctgcaatgttacagttctaagtgtgagttagagagacacgttcgtttatgctctggtgtgtggaagaaagatctcttacgtgagtgcacttgtgatatatgtaagaaacaattctcactcaagagttatttatcaacacacatgcgtaaacacactggtgagaaaccatataattgtgatatatgtaagaaacaattctcacacaagagtactttatcaacacacatgcatacacacactggtgagaaaccatataattgtgatatatgtaagaaacaattctcacagaagagtaattttacaacacacatacgtacacacactggtgagaaaccatttaattgtgatatatgtaagaaacaattctcacacaagagtactttatcaacacacatgcatacacacactggtgagaaaccatttcattgtgatatatgtaagaaacaattctcacacaagagtcattttacaacacacatgcgtacacacgctagtgggaaacaatttcattgtgatatatgtaagaaacaattctcactcaagagtactttatcaacacacatgcgtacacacactggtgagaaaccatttcattgtgatatatgtaagaaacaattctcacacaagagtcgttttacaacacacatgcggacacacactggtgagaaaccatttcattgtgatatatgtaagaaacaattctcactcaagagtactttatcaacacacttgcgtacacacactggtgagaaaccatttcattgtgatatatgtaagaaacaattcttactaaagaaacaccttataacacacatgcgtacacacactggtgagaaaccatataattgtgatatatgtaagaaacaattctcacagaagagtactttatcaacacacatgcgtacacacactggtgagaaaccatataattgtgatatatgtaagaaacaattctcactaaaggcacaccttataacacacatgcgtacacacactggtgagaaaccatataattgtgatatatgtaagaaacaattctcactaaaggcacaccttataacacacatgcgtacacacactggtgagaaaccatttcattgtgatatatgtaagaaacaattcttacacaagagtattttatcaacacacatgcgtacacacactggtgagaaaccatataattgtgatatatgtaagaaacaattcttagaaaaggcacacctaactggacatatgcgtacacacactggtgagaaaccatttcattgtgatatatgtaagaaacaattctcacacaagagtcattttacaacacacatgcgtacacacactggtgagaaaccatttcattgtgatatatgtaagaaacaattcttacaaaaggcacacctaactggacatatgcgtacacacactggtgagaaaccatttcaatgtgatatatgtaagaaacaattctcacgaaaggcacacctaacaagacatatgcgtacacacactggtgagaaaccatataattgtgatatatgtaagaaacaattctcactaaaagcacaccttataacacacatgcgtacacacactggtgggaaaccatttcattgtgatatatgtaagaaacaattctcacacaagagccatttaacattgcatatgcgaacacacagcggtgagaagccgtataatgtgtaa
Protein Sequence
MYNLSMCRVCLEEDFRLISIVGTHLQEMYESLVLRPLETTDGKPMVICYICRARLENCYELRKSCLQSEELFTQMLNSAESEQVQLHATHSKKKLTMHNVIHLSVGHELGMDADNSGVEALKCEVKDEPYDGEGDSTPKEPTQDAQKSSEELTTRNMNEHELIQDTSKELHEVTAAYVTDDNKEIPTSIPHINRVQYTCDTCLQCYSSKCELERHVRLCSGVWKKDLLRECTCDICKKQFSLKSYLSTHMRKHTGEKPYNCDICKKQFSHKSTLSTHMHTHTGEKPYNCDICKKQFSQKSNFTTHIRTHTGEKPFNCDICKKQFSHKSTLSTHMHTHTGEKPFHCDICKKQFSHKSHFTTHMRTHASGKQFHCDICKKQFSLKSTLSTHMRTHTGEKPFHCDICKKQFSHKSRFTTHMRTHTGEKPFHCDICKKQFSLKSTLSTHLRTHTGEKPFHCDICKKQFLLKKHLITHMRTHTGEKPYNCDICKKQFSQKSTLSTHMRTHTGEKPYNCDICKKQFSLKAHLITHMRTHTGEKPYNCDICKKQFSLKAHLITHMRTHTGEKPFHCDICKKQFLHKSILSTHMRTHTGEKPYNCDICKKQFLEKAHLTGHMRTHTGEKPFHCDICKKQFSHKSHFTTHMRTHTGEKPFHCDICKKQFLQKAHLTGHMRTHTGEKPFQCDICKKQFSRKAHLTRHMRTHTGEKPYNCDICKKQFSLKAHLITHMRTHTGGKPFHCDICKKQFSHKSHLTLHMRTHSGEKPYNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01197988;
90% Identity
iTF_01197988;
80% Identity
iTF_01197988;