Patr133285.1
Basic Information
- Insect
- Phosphuga atrata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_944567605.1
- Location
- CALYMX010007072.1:83044-107800[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9 8.9e+04 -4.7 1.2 52 87 551 584 533 596 0.33 2 2 8.6e-107 4e-102 344.5 37.9 1 300 752 1038 752 1038 0.95
Sequence Information
- Coding Sequence
- ATGGTGGCCGCGCCTCGAATTTGCCTCGATCCCAAATGGGATCTGCTGCTGCAGACGAAGAGGATGTTGTCGCTGGCCGACTGCCTTCCGCGGGACGGAAACGAGTTTTCCGGCGACGTCGCCATTCAGCGCGTCCCCTTGGCGGCCAAAATCTCTCTGACGAAAAACTTTAACGGACCGGCAGGGGAATCAACAAAAAATAGATTGGGACACACGAGGAGCCACTCCATAGGGGAGGCTACAAAAAAACGTAAAGTGGCGGATAGACTTTCCACAGATGACATTATCGAGCCTTACAAGAAAACGGAGTGCCCGATTGTTTTCACCATCGTGGAGACCATCGGGGCTCTGACCAAACAGGTTGAGGACTTGGAAAAAGCCATCGCGGCTAGCCCAAGTACCAAAAGGGAAGTCAGGGAATTAGCAACGAGAGTCAGGAAGTCAGCGAACGTCTTCTCGCGCGATTCTGTCTCTAGCTGGTTGGAACAGCACCGCTTCGAGCCTATCCAGAAGCTAACTTTCGACGTGGAAGTCCAAACAAGGGAGGCGAACATGGAGCGAGATAACCTACGTATAAAGACCTGCAACGCCAGCATGCAAACAAATTCCACCGAGGAAGAAGACGAAATAAAAGAATTGCGCGACCAAATATCAAACGGCAGGACATTCGACGAGTTCGTCGAGATTGCAGAGAAAGAATGGCCGCGCGAAACCTTCACAAAAGTGAAGGAGGGCCATGGACACGCGCTAGCGACAACCTCGGAATGGGACATCGTGTGGTGCGTAGACGAGAACATGTTCCCAGACCAGGGAGTGCCAAGGGCACTAACGGAGGCCTATGCAAGGCCCGAGGAAACGCGAAGGCAGGCACCAAAGGTTGGTAGAGTGGTATATCTCAAACATACCATCGACATGCCAGACGAAAATGGGGACATAAAAACCGAAGAACGCTACGTGTACCAAATGGTTACTAAGAAATCTCCAACGGACGAGACAGAGAAAAAAGACCTGTACTCGTGCCTGGAGAAGCTGAAGCTGATAAGCGAACAAAATCGGCGGAATAAGCTAGCTATACACCGGCCCAGAGAAGCCGACTGGCAAATAACCAAAAAGGCGCTAGAATTCATATTCGCCAACACCGAGATAGAGGTACGGGTATACTGTCCAACCACACCACATCAGAAGAAACAACAACAGGAGCAAGGGACGAGTGACACAAATTGGACGGAAGTGGTGAAAAAAGGCAAGCGAACTACCGAAGCAACTGGGAAAACACAGCTAGGACCAAAGAACAAAAGAACGGAAGCCGTGCTGGTTAAAGCCGACGGCAGACCTtatgctgacctgctgaaaatgGAAAAATACAAGAAGCACTGCTCAAAGTCTGGCTGGACCATAATCAATTTAAACGAAGAGAAAATTAAAAGGAGTATTGCACACGAATTATCAAGGACCCACGAAAAAAGCGACGATACGTTGATCCAGCTGATGTGCAAAGTATGCGACGACACTCTGACCAAGAAAACAGGACTAAAAACATACAGAACAACATACTGGTGGACGGATGAAATCGCGACCACGAGAGCCGCATGCGTCATGGCCAGGAGAAGATACCAACGCCAAAGGGCAAAAACTAACGAGCACGGAATCAACCAAGCGCTTAGCATAGCGTATAAAAATAAGTCACATTCCGAGATATCGGAGGAAACACGACGCCCAGCGAGCGTTTCCAGCGATAGCAGTTGCGATTCGATAGCAGAAATTCTAAAAGAACTTTCCAATACCCACCAATCACCCAAGAACCTTCCAAGCGAACCGTCGCAAACATGCCCCGACGATTTTAACGACACAATGGGCCAAAAACACTCGACCAACTTGGACGCGGAATTCCAACCAAAACTCGAAGAGCTTCCCGATCTTCCAGAACTTCCACAAGTAACAATTAACCAACAGCTTTCCAAACCGAAGAATTCGGATTTGAACCAAGAAAATGAACATGAAAAACAATTGCCCAATCTTCCACCGGAACTACCATCGACGAAATCAAACACAATCAAACAATCGACATCCATTGGAGCCAAGCAAGAAAAACAAGATTTTGATAGTCTTCCACCGGAACTTCCACCTTACAAATCAACCACTATTAACAAATCTTCCAGCAAAATCGATTTGGAAAAGGAACTCGATTCCCCAAAACTTCCGCCTTCTGAACCCGACACAATTAACCAATTCCTTTACAGCGTAAACAATTCAGCGGAGGCTCGTTTGTTGGCTCGCCGGGCGGCTCGTGCGGAGGCCAGGGAGATTCGCATGCGGGATTTGGAGCGGCAGCAGCGCGAGCAGGAGGAGAATGCGGATCGACAGTTCGACATGCTAGCGGAACCTTTGGCCCGGCGGCCGGGCAGCACCACCTCCAGGTACTTGTCCAGCCGGCGGTCGTCGGAAGACTCGCTGGAGGATACTGGAAGTCTCAGAGATTTAAGGCATGAGCTCAAAGAGGTCGAGGAGAAGTTCCGCAAGGCCATGATAGCCAACGCCCAATTGGACAACGACAAAGCCGCCCAGACGTACCAATTGGAACTCTTAAAAGATAGGTTGGAAGAATTGGAAGAAGAACATTTCCAATTGAAACGGGAACATAAGGAGAAGTGTCGAGACACTGAGCAATTGAAACGTTTGACGGTGCGATTGCGTGAGGATTTGTGCGTGTTGAAAGCGGAGCTGGAGGAGCGGGACCGGTTGATCGAAGAGAAGGGTTTAGTGATTATCGTCGAGGAGGAGACCATCGAGGACGACGAAGAGAACGGGACGAAGCTGCGCAAGGCGCTGGTCAGTAAGGAGAACGCGGAGATCCTGGAGAACGCCGGCGAGGGCAGCCTGGACGTGCGATTGGCGCGGTTCGCGAAGGATCGTGGCGAGCTGCAGGATCAAATTAGTCACTTAAAGTTAGAGCTGGAGGAGGAGAAGAACAAGCGGAGGAAACACAGCGGATCGACGGTTAACGGACCCAATTATGACTCTGATCACGATGCTGTTGATCTACAAAGGGAAACGACAAAGCAACTAGCGGAGTATAAATTCAGGGCGCAAAAGGCGGAACAGGATGTGGCGACGTTGCAGGCGACCGTGGCGCGTCTGGAGAGCCAGGTGATCAGATACAAATCGTCGGCGGAGGTCTCCGAGAAATCGGAGGAAGCCTTGAAACTTGAGAAACGGAAACTGCAGAGAGAGGTACATCCCGAACCCCGCACCCAAACCCCCTCCGCTTTGTAG
- Protein Sequence
- MVAAPRICLDPKWDLLLQTKRMLSLADCLPRDGNEFSGDVAIQRVPLAAKISLTKNFNGPAGESTKNRLGHTRSHSIGEATKKRKVADRLSTDDIIEPYKKTECPIVFTIVETIGALTKQVEDLEKAIAASPSTKREVRELATRVRKSANVFSRDSVSSWLEQHRFEPIQKLTFDVEVQTREANMERDNLRIKTCNASMQTNSTEEEDEIKELRDQISNGRTFDEFVEIAEKEWPRETFTKVKEGHGHALATTSEWDIVWCVDENMFPDQGVPRALTEAYARPEETRRQAPKVGRVVYLKHTIDMPDENGDIKTEERYVYQMVTKKSPTDETEKKDLYSCLEKLKLISEQNRRNKLAIHRPREADWQITKKALEFIFANTEIEVRVYCPTTPHQKKQQQEQGTSDTNWTEVVKKGKRTTEATGKTQLGPKNKRTEAVLVKADGRPYADLLKMEKYKKHCSKSGWTIINLNEEKIKRSIAHELSRTHEKSDDTLIQLMCKVCDDTLTKKTGLKTYRTTYWWTDEIATTRAACVMARRRYQRQRAKTNEHGINQALSIAYKNKSHSEISEETRRPASVSSDSSCDSIAEILKELSNTHQSPKNLPSEPSQTCPDDFNDTMGQKHSTNLDAEFQPKLEELPDLPELPQVTINQQLSKPKNSDLNQENEHEKQLPNLPPELPSTKSNTIKQSTSIGAKQEKQDFDSLPPELPPYKSTTINKSSSKIDLEKELDSPKLPPSEPDTINQFLYSVNNSAEARLLARRAARAEAREIRMRDLERQQREQEENADRQFDMLAEPLARRPGSTTSRYLSSRRSSEDSLEDTGSLRDLRHELKEVEEKFRKAMIANAQLDNDKAAQTYQLELLKDRLEELEEEHFQLKREHKEKCRDTEQLKRLTVRLREDLCVLKAELEERDRLIEEKGLVIIVEEETIEDDEENGTKLRKALVSKENAEILENAGEGSLDVRLARFAKDRGELQDQISHLKLELEEEKNKRRKHSGSTVNGPNYDSDHDAVDLQRETTKQLAEYKFRAQKAEQDVATLQATVARLESQVIRYKSSAEVSEKSEEALKLEKRKLQREVHPEPRTQTPSAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -