Patr019427.1
Basic Information
- Insect
- Phosphuga atrata
- Gene Symbol
- -
- Assembly
- GCA_944567605.1
- Location
- CALYMX010000294.1:347470-350816[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.7e-11 2.1e-08 36.6 0.0 1 39 289 328 289 332 0.90 2 4 4.3e-12 5.2e-09 38.5 0.1 1 39 343 381 343 384 0.95 3 4 1.5e-18 1.8e-15 59.2 0.0 1 45 398 443 398 443 0.98 4 4 0.22 2.6e+02 4.3 0.1 1 13 450 462 450 462 0.92
Sequence Information
- Coding Sequence
- ATGTCGAAACCGACCGAGCGCAACGTGGACAGGTGCATTAACTCGCTGCTGAAAACAGCGGATCAATTAAAAATTAAAGGACTGTGTGAGTCGCCGGACGAAAAGGAGAATTCAGAATCGCCGTTTCCTTTTATAGCAAGAGAATTTCCAAAGCTGCGAAGATTGGATTCCCCGAAACACTTAAGCAGTTTGGATAACAACAATAGAAAACACAAATATAGGAAGCCGGAGAAAGTCGTAGCTAATTCGGACGACAAAAACGAAAATTCTGACGAATTGAACAGTTCAGACGAAGAAAATGAAAAGCCAGTGACTGCCACGAATGAAGAGAGGAAGAGGAAGCAAGTCACGCCAGTTCAAAATAAACCTCTTAATATGAGCAGTAATGCCCTTTTATCCGGACAGTTACTCTTCACACAGTTTGGAGTGGACAATGAGGATTTTCCTCCGGAACCACCGGCGCCGACGGCGACGCCTGTCGGTCACGTAGACATGCAAGACCATTCACCGTCTCGGACACTACTCACAAACTCTTCACTTCATAGGACAGACCTATCAGATTCGCACATAAAATACGACATCAAGAAAGAAATCGATATTAAATTTGAAACGTTACGATCGTTCGATCAGGATTCCCTATTGGATATAGACAGTTCGCACATGTCTGGACCCGACCATTCCATGGACAGTCACGAAGATCCTGAACAGTCTTTGTCACATACTACCATGATGATCACACCCGAACTCATGGGAATGATGCCACCAGGAGTATCACACCGAATGGAACAAATGGATCCGTCAATAAAATCAAATGGACACGGAGACACGCCAATAACAAGACACGGAGGTGGTCCAAAAACGTGGACACAAGAAGATATGGAATTAGCTTTAGATGCCTTAAGAAACCATAATATGAGTCTAACAAAGGCTTCGGCAACGTATGGTATTCCTTCTACGACGTTATGGCAACGGGCACATAGATTAGGAATAGATACCCCGAAGAAAGAAGGCCCAACAAAATCATGGACTGAAGAAAATTTAAATTCCGCCTTAGAAGCCTTAAGAACCGGCACGATTTCTGCGAATAAAGCGAGCAAAGCCTTTGGTATTCCAAGCAGCACGTTATACAAAATCGCGCGACGAGAAGGAATTCGACTGGCTGCACCGTTTAATGCGGCTCCGACCACATGGACGCCAGAAGATTTAGAAAAAGCCTTAGAGTCCATAAGATCGGGACAGACTTCGGTGCAAAGAGCCTCCACAGAATATGGGATACCTACTGGAACTTTGTATGGGAGGTGTAAAAGGGAAGGGATTGAACTTTCCAGGTCGAATCCTACACCTTGGTCTGAAGACGCTATGGGTGAAGCATTAGAAGCTGTTAGGTAA
- Protein Sequence
- MSKPTERNVDRCINSLLKTADQLKIKGLCESPDEKENSESPFPFIAREFPKLRRLDSPKHLSSLDNNNRKHKYRKPEKVVANSDDKNENSDELNSSDEENEKPVTATNEERKRKQVTPVQNKPLNMSSNALLSGQLLFTQFGVDNEDFPPEPPAPTATPVGHVDMQDHSPSRTLLTNSSLHRTDLSDSHIKYDIKKEIDIKFETLRSFDQDSLLDIDSSHMSGPDHSMDSHEDPEQSLSHTTMMITPELMGMMPPGVSHRMEQMDPSIKSNGHGDTPITRHGGGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRSGQTSVQRASTEYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01126271;
- 90% Identity
- -
- 80% Identity
- -