Opun001611.1
Basic Information
- Insect
- Othius punctulatus
- Gene Symbol
- -
- Assembly
- GCA_951805005.1
- Location
- OX638138.1:35412754-35436485[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.2e-11 1.3e-08 36.3 0.0 1 39 307 346 307 350 0.90 2 4 1.1e-12 1.2e-09 39.6 0.1 1 39 361 399 361 402 0.95 3 4 1e-18 1.1e-15 58.9 0.0 1 45 416 461 416 461 0.98 4 4 3.9e-16 4.1e-13 50.6 0.0 1 39 468 507 468 511 0.93
Sequence Information
- Coding Sequence
- ATGAAAGCTGGTATTAGGTATTTAGACAGTGAAGAATGGAGAAAAAAGTGCAGGGCAATAATCGCAGATTTTTTGATTGCTTACTTTTTCGAGAAGTCCCTGCTGAAAACCGCCGATCAATTAAAGATAAAGGGCCTGTGCGAGTCGCCGGACGAGAAGGAGGGCCCGGAGTCTCCCCTGCCCTTCGTAGCGCGCGAATTCCCCAAGCTCCGCAGGTTGGACTCGCCGAAACAGCCCGGCGGCGGCCCCGACAACAACAACAGGAAGCACAAGTACAGGAAGCCCGAGAAGATCGTGCCGGCGAAGGAGCAGGAGCGGGACTCTGATGCTGACGCCACGGATGACGAGACGAAGCCGCTGGTAGCCGCCAATGAGGAGAGGAGACGCAAGCAAGTGACGCCAGTGCAGAACAAGCCGCTGAACATGAGCAGCAATGCCCTCCTAGCCGGACAGATGCTCTTCTCGCAGTTTGGAGTGGACAATGAGGACTTTCCACCTGAGCCTCCCGCGCCGACGGCGACGCCCGTCGGACACGTAGACATGCAAGACCATTCCCCAACGCGGACCCTACTTACGAACTCCTCCATACACCGGACAGACCTTTCAGATTCGCATATTAAGTTCGGCGATATTAAAAAAGAGATCGACATAAAATTCGAAACGTTACGATCGTTCGACCAGGAATCGCTGCTGGACATCGACAGCTCGCACATGTCGGGACACGACCATTCGATGGACAGCCACGAGGACCCGGAGCAGTCGATGCACCACACGACCATGATGATCACCCCAGAGCTCATGGGAATGATGCCGGGTGCTTCACACAGAATGGATCAAGGCATGGACCATCAAATGAAGACGAACGGACATTCGGAGCATATGCCTGGTACTCGACATGGTGGCGGCCCGAAGACATGGACACAAGAGGACATGGAACTAGCGCTAGATGCATTAAGGAATCACAATATGAGCTTAACTAAGGCTTCTGCAACCTACGGCATTCCTTCGACGACATTGTGGCAACGCGCCCACCGACTAGGCATCGACACGCCCAAAAAAGAGGGGCCCACGAAGTCGTGGACAGAAGAGAACCTGAACTCGGCCCTCGAGGCACTGAGAACCGGAACTATTTCCGCGAACAAAGCCAGCAAAGCTTATGGCATACCCAGCAGCACACTGTACAAAATAGCGAGAAGAGAAGGCATTCGACTGGCGGCGCCCTTCAACGCTGCGCCCACGACGTGGACCCCAGAAGATCTGGAAAAGGCACTGGAATCGATCAGGTCTGGTCAGACGTCCGTTCAGAGGGCATCGACGGAGTACGGAATACCCACGGGGACGCTGTATGGAAGATGCAAGAGGGAGGGCATCGAGTTGTCCAGGTCAAATCCCACGCCGTGGTCGGAAGATGCCATGGGCGAAGCTTTGGAGGCAGTCAGATTAGGTCATATGTCAATAAATCAAGCAGCAATACATTATAATCTGCCATATTCATCACTGTATGGGCGGTTTAAAAGAGGCATCAAGTACGAATCGGACCCAATCGACACAAACACCGACAGTCAATCACAGCTGGATGGCCAACCCCACATGATGGATTACTCCAATTCCCATCAAATCCAATACCAGAACCAGTCGAACAGCTGA
- Protein Sequence
- MKAGIRYLDSEEWRKKCRAIIADFLIAYFFEKSLLKTADQLKIKGLCESPDEKEGPESPLPFVAREFPKLRRLDSPKQPGGGPDNNNRKHKYRKPEKIVPAKEQERDSDADATDDETKPLVAANEERRRKQVTPVQNKPLNMSSNALLAGQMLFSQFGVDNEDFPPEPPAPTATPVGHVDMQDHSPTRTLLTNSSIHRTDLSDSHIKFGDIKKEIDIKFETLRSFDQESLLDIDSSHMSGHDHSMDSHEDPEQSMHHTTMMITPELMGMMPGASHRMDQGMDHQMKTNGHSEHMPGTRHGGGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRSGQTSVQRASTEYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYESDPIDTNTDSQSQLDGQPHMMDYSNSHQIQYQNQSNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01196605;
- 90% Identity
- -
- 80% Identity
- -