Pvar005913.1
Basic Information
- Insect
- Phortica variegata
- Gene Symbol
- -
- Assembly
- GCA_001014415.1
- Location
- JXPM01001037.1:4296-7443[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.0023 20 5.4 0.4 26 46 119 139 111 146 0.85 2 7 0.023 2.1e+02 2.1 0.1 22 48 143 169 140 173 0.86 3 7 0.00038 3.4 7.9 0.1 21 45 170 194 167 198 0.89 4 7 0.00021 1.9 8.7 0.1 22 52 318 348 312 350 0.91 5 7 0.13 1.1e+03 -0.2 0.0 23 44 435 456 431 461 0.84 6 7 0.00018 1.6 8.9 0.0 21 49 461 489 457 492 0.87 7 7 0.005 44 4.3 0.2 21 46 489 514 487 516 0.91
Sequence Information
- Coding Sequence
- ATGCACCTGAACCACGCGACCGCAGCGTCGGCCATGGCCAACTATCAGCACTATGCGCCGGCACAGATTTCCCATGGTGGAGGAGGCGGTGGAAACGTTGTGCAACAGCCAACGATAACGGCAGGTCTGCAGCAAGGCCCCTTTACACTACACCAACTAACTGCCGTACAAGCGATACAACATCCAACGCATCAGGCAATGCTACATCCACAACATCCGCTGGTGCATCTGCTAGACATCTCGACTACAACGAATAATGTGAACAACTCAACGGCCATCTCGCCAACAAAGATCGAAGTACAGAGCGTTATTAGCGAAGAAGAGGTGGTCGTCGAAGATCCGCGCAAGAAGAAACAATGCcacatatgcaaaaacaagttCCGTCAACTGACTACATTACGTAACCACATGAAGATTCACACTGACGAACGGCCGTACAAATGTAAGCACTGCGACAAGGCTTTCCGTCAAATTTCAACGCTCACCAATCATGTAAAGATACACACTGGCGAGAAACCGTTCACTTGCAATATATGCGCCAAGGACTTCCGACAACAAAGCACGCTAATAAATCATATCAAGACGCATAAGGAGTCCAGCACACCAACATCGCTTTTAAACTACCAGCcaccgcagcagcaacaaccgTCATCAGGCAAACACAGTCGCAAGTctcaaaatcaaatgcaaaatgctgcgtaccaacagcaacaatcgcAACGTGTGCCAATCTCAAAGACGCTTTACTCCGGTAGTTATAACTCGCCCCAGGCCGAGGAGCTAGTGAAACCGTATCAGTGCAATGTATGTAAACGTCGATTCCCGCAGCTGAGTACGCTGCACAATCACGAGCGGACGCATATCGATCCCAAGCCGTACAAATGCGAGACTTGCGACAAATCGTTTAGTCAGTTGGCCACGTTGGCTAACCACAAGAAGATACATACTGGTGACAAGCCGTACACCTGTAGCTACTGTCATATGCAGTTCCGACAACAGAGCACTCTTACTAATCATATGAAGACGCACACGCACGCCCAACCAACACCAGGAGATCACACGTCCGGCGTTGGAACGATGGCAGCACCACAGGGTCTACATAATAGCATCAGCACCGGACCCAATATACTCCAGATCGATCATCATCCGCTGTTGCATTTTCTCGATAGCACTACGACAGTCAGCCCAGTTGTCACCGGGAATTCGGTGACGCCAAAGGTCGAAGCCTACCACAATCCCAGCGGTCGCATTTCTCAGTTAAGCGCAAGCAGTGTGCCAAGCATCAAAGGTGAATGTCCTGACCGTCCATTCGGTTGCGGCATCTGTCGGCGTTTCTTTTCACAGCAAAGCACTTTGGTTAATCACATTAAAACACACACCGGTGAAAAACCATACAAGTGTAAGGTTTGTGATGCTAACTTCCGACAAGTTGCAACACTCAACAACCACATGAAGATCCATACCGGTGAAAAACCTTATAGCTGTTCCTACTGTCCTAAGCAGTTCCGTCAGAAGAGTACGCTACAGAACCATCTACGTGTGCATACTTGCTAA
- Protein Sequence
- MHLNHATAASAMANYQHYAPAQISHGGGGGGNVVQQPTITAGLQQGPFTLHQLTAVQAIQHPTHQAMLHPQHPLVHLLDISTTTNNVNNSTAISPTKIEVQSVISEEEVVVEDPRKKKQCHICKNKFRQLTTLRNHMKIHTDERPYKCKHCDKAFRQISTLTNHVKIHTGEKPFTCNICAKDFRQQSTLINHIKTHKESSTPTSLLNYQPPQQQQPSSGKHSRKSQNQMQNAAYQQQQSQRVPISKTLYSGSYNSPQAEELVKPYQCNVCKRRFPQLSTLHNHERTHIDPKPYKCETCDKSFSQLATLANHKKIHTGDKPYTCSYCHMQFRQQSTLTNHMKTHTHAQPTPGDHTSGVGTMAAPQGLHNSISTGPNILQIDHHPLLHFLDSTTTVSPVVTGNSVTPKVEAYHNPSGRISQLSASSVPSIKGECPDRPFGCGICRRFFSQQSTLVNHIKTHTGEKPYKCKVCDANFRQVATLNNHMKIHTGEKPYSCSYCPKQFRQKSTLQNHLRVHTC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00890304;
- 90% Identity
- iTF_01195673;
- 80% Identity
- iTF_01196144;