Basic Information

Insect: Phortica variegata
Gene Symbol: L
Assembly: GCA_001014415.1
Location: JXPM01002036.1:48403-54702[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 4.6e-06 0.00038 20.7 1.7 1 23 174 196 174 196 0.98

2 19 0.38 32 5.3 5.8 1 23 202 224 202 224 0.98

3 19 2e-07 1.6e-05 25.0 3.1 1 23 230 252 230 252 0.99

4 19 9.1e-06 0.00076 19.8 0.3 1 23 258 280 258 280 0.98

5 19 0.026 2.2 8.9 0.1 2 23 345 369 344 369 0.87

6 19 0.00035 0.029 14.8 0.6 2 23 398 420 397 420 0.96

7 19 0.024 2 9.0 0.7 1 23 526 548 526 548 0.97

8 19 0.0066 0.55 10.8 0.3 2 23 556 577 555 577 0.94

9 19 0.00066 0.055 13.9 0.9 1 23 585 609 585 609 0.93

10 19 9.3 7.7e+02 0.9 0.0 1 19 614 632 614 634 0.92

11 19 0.17 14 6.4 1.4 2 23 645 667 644 668 0.94

12 19 0.0012 0.099 13.1 2.9 1 23 715 737 715 738 0.96

13 19 5.4 4.5e+02 1.6 1.1 1 23 905 929 905 929 0.87

14 19 0.21 17 6.1 7.0 2 23 938 960 937 960 0.94

15 19 0.035 2.9 8.5 0.1 1 23 966 988 966 988 0.92

16 19 0.022 1.8 9.2 0.1 2 23 996 1017 995 1017 0.94

17 19 0.6 50 4.6 1.6 2 23 1117 1138 1117 1138 0.94

18 19 0.0025 0.21 12.1 0.0 1 23 1148 1170 1148 1170 0.97

19 19 0.028 2.4 8.8 1.9 1 23 1177 1199 1177 1199 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	4.6e-06	0.00038	20.7	1.7	1	23	174	196	174	196	0.98
2	19	0.38	32	5.3	5.8	1	23	202	224	202	224	0.98
3	19	2e-07	1.6e-05	25.0	3.1	1	23	230	252	230	252	0.99
4	19	9.1e-06	0.00076	19.8	0.3	1	23	258	280	258	280	0.98
5	19	0.026	2.2	8.9	0.1	2	23	345	369	344	369	0.87
6	19	0.00035	0.029	14.8	0.6	2	23	398	420	397	420	0.96
7	19	0.024	2	9.0	0.7	1	23	526	548	526	548	0.97
8	19	0.0066	0.55	10.8	0.3	2	23	556	577	555	577	0.94
9	19	0.00066	0.055	13.9	0.9	1	23	585	609	585	609	0.93
10	19	9.3	7.7e+02	0.9	0.0	1	19	614	632	614	634	0.92
11	19	0.17	14	6.4	1.4	2	23	645	667	644	668	0.94
12	19	0.0012	0.099	13.1	2.9	1	23	715	737	715	738	0.96
13	19	5.4	4.5e+02	1.6	1.1	1	23	905	929	905	929	0.87
14	19	0.21	17	6.1	7.0	2	23	938	960	937	960	0.94
15	19	0.035	2.9	8.5	0.1	1	23	966	988	966	988	0.92
16	19	0.022	1.8	9.2	0.1	2	23	996	1017	995	1017	0.94
17	19	0.6	50	4.6	1.6	2	23	1117	1138	1117	1138	0.94
18	19	0.0025	0.21	12.1	0.0	1	23	1148	1170	1148	1170	0.97
19	19	0.028	2.4	8.8	1.9	1	23	1177	1199	1177	1199	0.97

Sequence Information

Coding Sequence: ATGATGGCTTTGAAGATGTTATATCGTGGACCCAGTTCAAGACTTGAGAATCTCATTGAGAAAATTCAAGCAACAAAGGAGATAACAAGTAACGACATGTACTCAACGCACACTTCATCCAGTTACTCACCATCGATTTCGGATGGCACGTTGACGCCCAATTCCTTGCCACCACACTCCTTACACTTGTCCGGTCTACCGAGCCATGTACACGAAAGGACACAAGATGGCCAAACGTCGCCAAGTCTGGGACCAAAGGCGAACGGTAATGTCAACGCTAGCGAAGGCGCTCAACTGGAAGTTGGCACCGTGGCCGAGGCAGAGGCCAAGAAGCGACAGGCACAACGACACATGCAGCCGCATCGCCATGTTGAGCATGCCTTGAAAATGGCGCATAAACTGCGTAAAATCGATAGGGATGCAGGCACGGCTGGCGGCGCGTCTGCGTCGTCGACGGCAGCGCAGAAGTTTGATAAGTTGACAAGCGAAAGCATTAAGAGCTGCAGGCCCGACGGTTCCTATCAGTGTCAGTTCTGTGATAAATCGTTTCCGCGGCTCGGCTACTTGAAGAAGCACGAACAGAGTCATGCTGAACATCTGCCCTTCAAATGCGACTATTGTGCGCGTCTCTTCAAACACAAACGGTCACGCGATCGACACACTAAATTACATACGGGCGATCGTCGCTATCGATGTCCGCACTGCGAAGCAGCTTTCTCAAGGAGCGATCATTTGAAGATTCATATGAAGACACACGACAACCAGAAGCCTTTCCAGTGCACAATCTGCAATCGTGGCTACAACACTGCCGCCGCACTGACATCACACATGCAGAATCACAAGAAACAGGCGGCCATACTTGCTGCCGGTGGCAATCCGCAGGCTCTGAACTACAGTCCACGTTCCACAGGCTCTGCCTCAAGCAACGGCAGCCTCAATAAGCGTCGCTACGCTCTGGCCATTGCCTCGGACAGCAGTCCCAGTCGCCTGGAGTATCCTAAACGCGTACGCAGCNCGCTACCTTTGCAGTTACGATGTAGCTACTGCCCAAAGTCGGTCGAATTTAGCACATTAGAGCAGTTGAATGCGCACGTTCAGAGTGCTCATGAGAAGGAATACCAACAGACGCAGCAACAGCTCATAATGGCTTCCCCTGCTCCTACTGAGGTGGCTGCGAGTGGTTTTCAGCTGTCTTGCGAATATTGCACTATGAAATTCGCGAGCATTGCGACGCTCTTTCAGCATATGCGCAGCACTCACATCGATCGCTTGACAAGTCCCAACTCATATTTTGAGCATTTCAATCGCTTGGCCACAACGGGTACCTTCAGTCCGCGTCTAGCACTAGCTGCAGGAAtacagcatcaacagcaacagcaccagcagcaacatgtTGATCACTCGTCTATAAAGTTAGAGCAGCCAAGTTTACCGAGTCCGAAAGTGATGGAGCAAACGCCAAAGGCTCCGCTGCCATCGCAGGAAGAGGAACCAACCGATTTGAGTCAACACAATAAGCGTCGTTCAGCATCACCTCAAACCTCGCCCGGCGCAATGCCAGAAAAGCCAGGAGTCTTTTTCTGCAATCAATGTAATGCTGGCCTACCTGACTTTGAGAGTTTTCGTAATCATCTGAAGACACACATTGTCGAGGGTTTGAATTTGGTGTGTCAACACTGTGGCATGTCACTTCAAGATCAGACAGAGTTTGAGCGTCATGTCATTGGTCATTTCTTGATCACCAACTCTGAATATAATTGCTCTACGAGCTGCAGCAAGTCATACACCAAGCCTGACGAGTTACAGAAGCATCTTATGGACCAACATGTCGTCACCATGTTTAAGTGCGCTTTGTGTGCCGAACTTTTCGACACAAAGGTTGCAATTCAAGTGCATTTTGCCTGCGCACATACCGCCGAAACCAAACTCCTACGCTGCTCGGCCTGCATGGAGGTATTTCGTTCGGAAACTGATTTCCAAATACATGTCAAAACACGTCATCATTTGGCTAATAGtctgaataacaacaacaataccggTGCTGGTGCTCTAGGACTCAACACATTACAGTGCATGTTCTGTCGAGTTGTCTGCTCCTCAGAATTGGAAATGCACTTCCATTTGGCAGCGCACGCACGTCAATTTCGTTGCCCTTCCTGTCCGGAGACGTTCCATGTTGAGTTTCTACTCGACCGACACATGCAGACACATCACAGTGGCGCCAGCGAGCATGGCAGCGCTGAGAAAGATTCCTACGAGGAGCAGCAGTCAACGCTAAGTCCCATGAATTCTCTGTATGTAAACGCGCTTTTCGGTGGAAAGCCGCCGATGCTGCCGCCGATTGGGGCTcagacaaacaataacaacagcatcatcgATTATAATGTTGCCTTTGCTGCAGCACATCTACAGAAAGGACTCTTCCCACCGCCAAATGCCGCGGCAGCAAATAAATTCTACAGTCCGTTGCAAGTGGACACGGCCAGCGCGATGAAACAGCATCCAGCACTCATGTATGGGCTAAGTCAGCGCTACTTCGACACAAATCGTGCACTTATGGACATGTATGCTGCTCAGCAGGAGAAAAACTACTTTGTGAGTCCCAAgacgcaacagcaacaacagcagcaacaggcgGTTGCCATTACGCCGCAACCTGACAATCGTGGCAATGCCAGGGATGAGCTGAACAATACTGTGGCGTTACCCGGATTCAGTTGTGGCATGTGTGAGCGCAATGATTTCCGTACTGAGTCAGAAGTGCACTCTCATCGCAAGATCGTGCACAATATGAAGACGGGCGTCAGTCTACGTTGCGCCTATTGTTGCGGCAATTTCAAGTCACGTAGCGAGTTGGAACACCATATGAAGACCTGTCACAACTCCACCGGCAAACACAAGTGTCTCATTTGCGACGAAGTCTTTCCCTCGCCGGCCATACTTGCCGAGCACAAACTGCAGCACTCCAAGGTTGGCCAGTCCGGCAAGTGTTCGCACTGTGGCAAGCCACTGGCCGATGTTGCTGCCTTCAAAGAACATCTGGTTGAACacggcaataataataacgaggCCCAAGTGCCAGTGCAGTGCATTTGTTGTCGTCAAACGTTGCATTCGGACTTCGAAATCAGTTTGCATGCCAAGTTTCACACCAAATCTGGCAGCAGCAATCTCCAAGAGGCTGTCTGCGCGCTCTGTCTTGAGCCCCTGGGCAACGGCAATACCGTCGATGGTCCAGCAAAGGTTTGCGAGAAATGCTGCCGCAAACATAATCTCAATGCGCGTCCACGCAAACGCAGCACAGAACTCTACGAACGCCCCTCAGTAGAGGTATCCTACATAGAGAATCGTTGCAATCTCTGTAAGATGATACtaccacacgcacacaaactgCAGGAGCATTTGGTCGAGCACACATTTGCCGGCACGGAGGAGCGCGGCTACAATTGCTACATCTGCTCAGCGGTGTTCACGGCGCCCGCTGGTCTGCTCAATCACATGAACGAGCATGGGCCAAATGCGCGTCCCTACGATTGCAATCTCTGCACGGAAAAGTATTACTTCCGTGCCGAACTCGATCATCATTTGCGTGATCATGAGTTACGTCCACCACCGCCCCGACCAAAAGAGGAGCGTCCAACAACGCCGCAACCAACAGCGCCACCGCGAGCAACTGCTATGGCCACAACGCCACCAACAACGGTCAAACAAGAGTTATATGAGTCTGAAGCAGCGGAGGCGGCGAAAGAGCAAGAGGCAACAAGCGGTAACGGTGCCGACGACGATGAATATATTGAGGTGGAGCAGGTGCCGGAGCTAAGAACAGAGGAGACCGCCTCAGCTGCACATGGCAGCAACTCGCCTTTGGCTTAG
Protein Sequence: MMALKMLYRGPSSRLENLIEKIQATKEITSNDMYSTHTSSSYSPSISDGTLTPNSLPPHSLHLSGLPSHVHERTQDGQTSPSLGPKANGNVNASEGAQLEVGTVAEAEAKKRQAQRHMQPHRHVEHALKMAHKLRKIDRDAGTAGGASASSTAAQKFDKLTSESIKSCRPDGSYQCQFCDKSFPRLGYLKKHEQSHAEHLPFKCDYCARLFKHKRSRDRHTKLHTGDRRYRCPHCEAAFSRSDHLKIHMKTHDNQKPFQCTICNRGYNTAAALTSHMQNHKKQAAILAAGGNPQALNYSPRSTGSASSNGSLNKRRYALAIASDSSPSRLEYPKRVRSXLPLQLRCSYCPKSVEFSTLEQLNAHVQSAHEKEYQQTQQQLIMASPAPTEVAASGFQLSCEYCTMKFASIATLFQHMRSTHIDRLTSPNSYFEHFNRLATTGTFSPRLALAAGIQHQQQQHQQQHVDHSSIKLEQPSLPSPKVMEQTPKAPLPSQEEEPTDLSQHNKRRSASPQTSPGAMPEKPGVFFCNQCNAGLPDFESFRNHLKTHIVEGLNLVCQHCGMSLQDQTEFERHVIGHFLITNSEYNCSTSCSKSYTKPDELQKHLMDQHVVTMFKCALCAELFDTKVAIQVHFACAHTAETKLLRCSACMEVFRSETDFQIHVKTRHHLANSLNNNNNTGAGALGLNTLQCMFCRVVCSSELEMHFHLAAHARQFRCPSCPETFHVEFLLDRHMQTHHSGASEHGSAEKDSYEEQQSTLSPMNSLYVNALFGGKPPMLPPIGAQTNNNNSIIDYNVAFAAAHLQKGLFPPPNAAAANKFYSPLQVDTASAMKQHPALMYGLSQRYFDTNRALMDMYAAQQEKNYFVSPKTQQQQQQQQAVAITPQPDNRGNARDELNNTVALPGFSCGMCERNDFRTESEVHSHRKIVHNMKTGVSLRCAYCCGNFKSRSELEHHMKTCHNSTGKHKCLICDEVFPSPAILAEHKLQHSKVGQSGKCSHCGKPLADVAAFKEHLVEHGNNNNEAQVPVQCICCRQTLHSDFEISLHAKFHTKSGSSNLQEAVCALCLEPLGNGNTVDGPAKVCEKCCRKHNLNARPRKRSTELYERPSVEVSYIENRCNLCKMILPHAHKLQEHLVEHTFAGTEERGYNCYICSAVFTAPAGLLNHMNEHGPNARPYDCNLCTEKYYFRAELDHHLRDHELRPPPPRPKEERPTTPQPTAPPRATAMATTPPTTVKQELYESEAAEAAKEQEATSGNGADDDEYIEVEQVPELRTEETASAAHGSNSPLA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01195475;
90% Identity: iTF_01195475;
80% Identity: -