Basic Information

Insect: Phortica variegata
Gene Symbol: -
Assembly: GCA_001014415.1
Location: JXPM01011565.1:7119-10430[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 4.3e-05 0.0036 17.7 2.2 1 23 220 242 220 242 0.99

2 17 0.00016 0.013 15.9 3.8 1 23 249 271 249 271 0.97

3 17 0.22 19 6.0 0.2 2 23 308 329 307 329 0.95

4 17 0.003 0.25 11.9 6.9 1 23 417 440 417 440 0.98

5 17 0.05 4.1 8.0 0.5 1 21 447 467 447 468 0.93

6 17 0.012 1 10.0 3.8 1 23 477 499 477 499 0.97

7 17 2.5e-05 0.0021 18.4 0.2 2 23 507 529 506 529 0.96

8 17 0.00032 0.027 14.9 3.7 2 23 537 558 536 558 0.97

9 17 0.0019 0.16 12.5 0.2 2 21 585 604 584 605 0.93

10 17 0.0039 0.33 11.5 3.9 1 23 652 675 652 675 0.97

11 17 0.16 13 6.4 0.4 2 23 713 735 712 735 0.91

12 17 3.6e-06 0.0003 21.1 1.0 2 23 773 795 772 795 0.95

13 17 9.7e-05 0.0081 16.6 0.2 1 23 809 831 809 831 0.96

14 17 0.00013 0.011 16.2 1.9 1 23 837 859 837 859 0.99

15 17 2e-07 1.7e-05 25.0 2.1 1 23 865 887 865 887 0.98

16 17 0.00071 0.059 13.8 8.2 1 23 893 915 893 915 0.97

17 17 6.7e-05 0.0056 17.1 0.2 1 23 921 945 921 945 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	4.3e-05	0.0036	17.7	2.2	1	23	220	242	220	242	0.99
2	17	0.00016	0.013	15.9	3.8	1	23	249	271	249	271	0.97
3	17	0.22	19	6.0	0.2	2	23	308	329	307	329	0.95
4	17	0.003	0.25	11.9	6.9	1	23	417	440	417	440	0.98
5	17	0.05	4.1	8.0	0.5	1	21	447	467	447	468	0.93
6	17	0.012	1	10.0	3.8	1	23	477	499	477	499	0.97
7	17	2.5e-05	0.0021	18.4	0.2	2	23	507	529	506	529	0.96
8	17	0.00032	0.027	14.9	3.7	2	23	537	558	536	558	0.97
9	17	0.0019	0.16	12.5	0.2	2	21	585	604	584	605	0.93
10	17	0.0039	0.33	11.5	3.9	1	23	652	675	652	675	0.97
11	17	0.16	13	6.4	0.4	2	23	713	735	712	735	0.91
12	17	3.6e-06	0.0003	21.1	1.0	2	23	773	795	772	795	0.95
13	17	9.7e-05	0.0081	16.6	0.2	1	23	809	831	809	831	0.96
14	17	0.00013	0.011	16.2	1.9	1	23	837	859	837	859	0.99
15	17	2e-07	1.7e-05	25.0	2.1	1	23	865	887	865	887	0.98
16	17	0.00071	0.059	13.8	8.2	1	23	893	915	893	915	0.97
17	17	6.7e-05	0.0056	17.1	0.2	1	23	921	945	921	945	0.90

Sequence Information

Coding Sequence: ATGAAGCATCGGAAATTGCAAATAACCAAAGATTTAAAAGTAATGGCTTCGACATCCGTATGCCGAACTTGCTATGTGACAAGTCCAAAAGAGTTGTTCGGACTAGAATCATGTCTTAAGAAGTATCCTAGCAAAATGTTATTAGATTTGCTTGTGGAAGTAACTAAAATCAATATAAAACTGGAACACTCTGATAAATTACCGCAGCATCTTTGCTGCACTTGTTCactaaaattagaaaatgcaTACGAGTTCGTTCTGCAAGCCCGGGAGGTGAATTCAAGAATGTTGGAATATATTAAAGAACCGCAAGCCGATATGAAGCCTAATTATGACATGGATCTTCAGACAGAGCCTTTAATGGAACTGTGCACCGAACAGTTAGTGCAAGTGAAAATAGAGGACGGAACTGCcgaaaatgttgctgttgagaTTTCAGAACCATTATTAGAACAATATGTATTTGAACAGGACGCACAAGAAAATGACAATCAAGCGGACGGATCATTGGATCCCTTGACAACGGCTGAAAAACCAAGATGTGGCCCAAAATCTGATGGAAgatcaaaagaaaattcaagttCAGATGAATTAGATGAGTTGCCGCTTCAACAgagaaaaacatatttaaagcAGACAgtaaagcgtaaaaaaaaatttaaatgtgacGAATGCGAAAAATCTTTTAGTTGGCAGCGGAACTTGAACTTGCATAAAAGGAAGCACTTGCCTAAAGATGATTGGCATCCTTGTCCACACTGTAGAAAAAAATTCTGGCGAAAAGATGCTCTTCAGTCCCATTTAAGAAGTCATCGTCATGATACATCTGATACGTTCAAGTCGGCTGCAACTCTTTCGGAATGCAAACAAGCCAAGACAATCGATGTTAATCTGTGTAAGCCGCACGGCTGTAAATTAATTCAGTGTATGATctgtttgcaaaaatatgcaaaaataaatgagctACGCAATCATTTAAGTGAACATCCGCCAATTGATTCCTTCCCAGAACGCTCCCAAGAGACACTACAAGAGATTGCTGATTCATTTAGTATTGATATTAAAGATGTAACTGAAAACCTTTTGATTGCTCGTATACGTAAAGATCTGAGTGCTGGCAAATATGATAATTTCTACTCAATAACTAATCAATCTGGATATGAGTTGAGTTTATCAAGCTCAGAAACTGAAAGTGACATTGATGTAGAATCAAATGATCTCAAAAAGGCAAATTCGCAAAATTGTAGCTACACATGTGAGTTGTGCAATGTGAAATGTCGGCGTAAACATCAACTTTACGAACACCAAAGAAGACAGCATAGTTGGCACGAAGCTCTTCATGTTTGCGGTCGTTGTGATGCACGTTTTGTGAGCGAACAAATGCTGTTGCATCACTACCAATCGCAGTGtcgaaatgcacaaaaacgtTTCATATGCCGCAAATGCCCACTTAGATTTCGTTGGAAGCACAATCTGAAGATGCACTATAGAGAACATAGAAAGAATGTACAAACTCTTGAATGCGTAGAATGCGGACGTAGCTACGAGgataaaaaatcttttacgATACACATGCTTACTGTGCACACGGATGAGTCGAAGATGTTGCCTTGTCATTGGTGCAATCGGAAATTCTATCGACGTGACTATATGTTGAAACATCTAAAACGTCATGGGCTGAAAGAGGGTGATTTGCCACTAGCAAAGGCATTAATCGAAGCGACATCTAAACCAAATGGTGTAAAGCAAATTTACTGTAAAGTGTGTAATTTGCACTTCAATCGAATTTCGGAGCTTAGGGAACATTTGCtgattgaattaaaattggATTTTAATCGACACGAACATTATGATTCATTGCGAAACTACTCTATTATGAATGAGTTGGGCTTCGAATTGCATGTTGATGATTCCGAGACAGATAATGAAGGCGGCACTAGTGCACAATCTCCCTATATATGTGAACTGTGTAAAGTGCAATGCAAACgcaaatttgaattatttcaaCATCAGCGCTCCATGCATCGTTTCGAAACCTTGCCATATTCTTGTGgaaaatgcatatttaaatCTGTATCATTGgATATTCTTGAGCACCACAAGCGTACACAATGTCTGAATATACAAAAGCAGTTGTCATGCGGAAAgtgtaattttaaattcatgtGGCCGGAAAATCTTTCACGACATCTGGATTTACAGCATCCCGGGGAAATGAAGATTAACACCATCGTGGATATAGCGCACTCAACGAATTCAGGCACCCtcacaacaactgcaatagATCCCGCACCAGCAATACTACCAACTTCGTTGCAATGTCCTCATTGTGATCGCACCTACGTACAACAGTCTCGTCTTAATAACCACATACGCGATGTGCATATTGAAGGTGATCGAAAGAAGAAAGAAGCTGAACGTAAGTATCTTTGCTCGTTGTGTGGCAAAGAGTCACAATCCGCTGCCAATTTAGTCACTCATATGAGGAGGCACACTGGCGAAAAACCTTTCAAATGTGATATGTGCGAAATGGCTTTTCCTCGACACTCAGAGATGGTGCAGCATCGTCGAAAGCACACGGGAGAAAAGCCTTACCATTGCACAGTGTGTGGCAAGGACTTTGCGCGATCTGATAAGTTAACGCGTCATATGTTGACTCACAGTGGCCTAAGGCCACATAAATGCCACTTTTGCGATAAATGTTACAGGCAAGCAAAGGATCTTAAGTTGCACCTTTTGCAACACACTGGTGAGTCGCCATTTGATTGCAATACTTGTGGTGAACGATTCATTCAAAGCGTCGCTCTGGAAAAGCACCGAATGATGAGAGGTCATTTCGATGATATGCagtaa
Protein Sequence: MKHRKLQITKDLKVMASTSVCRTCYVTSPKELFGLESCLKKYPSKMLLDLLVEVTKINIKLEHSDKLPQHLCCTCSLKLENAYEFVLQAREVNSRMLEYIKEPQADMKPNYDMDLQTEPLMELCTEQLVQVKIEDGTAENVAVEISEPLLEQYVFEQDAQENDNQADGSLDPLTTAEKPRCGPKSDGRSKENSSSDELDELPLQQRKTYLKQTVKRKKKFKCDECEKSFSWQRNLNLHKRKHLPKDDWHPCPHCRKKFWRKDALQSHLRSHRHDTSDTFKSAATLSECKQAKTIDVNLCKPHGCKLIQCMICLQKYAKINELRNHLSEHPPIDSFPERSQETLQEIADSFSIDIKDVTENLLIARIRKDLSAGKYDNFYSITNQSGYELSLSSSETESDIDVESNDLKKANSQNCSYTCELCNVKCRRKHQLYEHQRRQHSWHEALHVCGRCDARFVSEQMLLHHYQSQCRNAQKRFICRKCPLRFRWKHNLKMHYREHRKNVQTLECVECGRSYEDKKSFTIHMLTVHTDESKMLPCHWCNRKFYRRDYMLKHLKRHGLKEGDLPLAKALIEATSKPNGVKQIYCKVCNLHFNRISELREHLLIELKLDFNRHEHYDSLRNYSIMNELGFELHVDDSETDNEGGTSAQSPYICELCKVQCKRKFELFQHQRSMHRFETLPYSCGKCIFKSVSLDILEHHKRTQCLNIQKQLSCGKCNFKFMWPENLSRHLDLQHPGEMKINTIVDIAHSTNSGTLTTTAIDPAPAILPTSLQCPHCDRTYVQQSRLNNHIRDVHIEGDRKKKEAERKYLCSLCGKESQSAANLVTHMRRHTGEKPFKCDMCEMAFPRHSEMVQHRRKHTGEKPYHCTVCGKDFARSDKLTRHMLTHSGLRPHKCHFCDKCYRQAKDLKLHLLQHTGESPFDCNTCGERFIQSVALEKHRMMRGHFDDMQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01195447;
90% Identity: iTF_01195447;
80% Identity: -