Poka008548.1
Basic Information
- Insect
- Phortica okadai
- Gene Symbol
- -
- Assembly
- GCA_034638295.1
- Location
- CM067849.1:43432796-43435850[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 4.9e-05 0.0046 17.7 2.2 1 23 206 228 206 228 0.99 2 17 0.00018 0.017 15.9 3.8 1 23 235 257 235 257 0.97 3 17 0.26 24 6.0 0.2 2 23 294 315 293 315 0.95 4 17 0.0038 0.35 11.8 7.0 1 23 403 426 403 426 0.98 5 17 0.057 5.3 8.1 0.5 1 21 433 453 433 454 0.93 6 17 0.014 1.3 10.0 3.8 1 23 463 485 463 485 0.97 7 17 2.9e-05 0.0027 18.4 0.2 2 23 493 515 492 515 0.96 8 17 0.00036 0.034 15.0 3.7 2 23 523 544 522 544 0.97 9 17 0.0022 0.21 12.5 0.2 2 21 571 590 570 591 0.93 10 17 0.0045 0.42 11.5 3.9 1 23 638 661 638 661 0.97 11 17 0.096 8.9 7.3 0.4 2 23 699 721 698 721 0.91 12 17 4.1e-06 0.00038 21.1 1.0 2 23 759 781 758 781 0.95 13 17 0.00011 0.01 16.6 0.2 1 23 795 817 795 817 0.96 14 17 0.00015 0.014 16.2 1.9 1 23 823 845 823 845 0.99 15 17 2.3e-07 2.1e-05 25.0 2.1 1 23 851 873 851 873 0.98 16 17 0.00081 0.075 13.9 8.2 1 23 879 901 879 901 0.97 17 17 7.6e-05 0.0071 17.1 0.2 1 23 907 931 907 931 0.90
Sequence Information
- Coding Sequence
- ATGGCTTCGACATCCGTATGCCGAACTTGCTATGTGACAAGTCCAAAAGAGTTGTTCGGATTGGAATCATGTCTTAAGAAGTATCctagcaaaatgttattagaTTTGCTTGTGGAAGTAACTAAAATTAATATAAAACTGGAACACTCTGATAAATTACCGCAGCATCTTTGCTGCACTTGTTCgctaaaattagaaaatgcatACGAGTTCGTTCTGCAAGCCCGGGAGGTGAATTCAAGAATGTTGGAATATATTAAAGAACCGCAAGCCGATATGAAGCCTAATTGTGACATGGATCTTCAGACAGAGCCTTTAATGGAACTGTGCACCGAACAGTTAGTGCAAGTGAAAATAGAGGACGGAACTGCCGAAAATGTTGCTGTTGAGATTTCAGAACCATTATTAGAACAATACGTATTTGAACAGGACGCACAAGAAAATGACAATCAAGCGGACGGATCATTGGATCCCTTAACAACGGCTGAAAAACCAAGATGTGGCCCAAAATCTGATGAaagatcaaaagaaatttcaaGTTCAGATGAATTAGATGAGTTGCCGCTTCAACAGAGAAGAACATATTTAAAGCAGACAGtaaagcgtaaaaaaaaatttaaatgtgacGAATGCGAAAAATCTTTTAGTTGGCAGCGGAACTTGAACTTGCATAAAAGGAAGCACTTGCCTAAAGATGATTGGCATCCTTGTCCACACTGTAGAAAAAAATTCTGGCGAAAAGATGCTCTTCAGTCCCATTTAAGAAGTCATCGTCATGATACATCTGATACGTTTAAGTCGGCTGCAACTCTTTCGGAATGCAAACAAGCCAAGACAATCGATGTTAATCTGTGTAAGCCGCACGGCTGTAAATTAATACAGTGTATGATCTGtttgcaaaaatatgcaaagatAAATGAGCTACGCAATCATTTAAGTGAACATCCGCCAATTGATTCCTTCCCAGAACGCTCCCAAGAGACACTACAAGAGATGGCTGATTCATTTAATATTGATATTAAAGATGTAACTGAAAACCTTTTAATTGCTCGTATACGTAAAGATCTGAGTGCTGGCAAATATGATAATTTCTACTCGATAACTAATCAATCTGGATATGAGTTGAGTTTATCAAGCTCAGAAACTGAAAGTGATATGGATGTAGAATCAAATGATCTCAAAAAGGCAAATTCGCAAAATTGTAGCTACACATGTGAGTTGTGCAATGTGAAATGTCGGCGTAAACATCAACTTTACGAACACCAAAGAAAACAGCATAGTTGGCACGAAGCTCTTCATGTTTGCGGTCGTTGTGATGCACGTTTTGTGAGCGAACAAATGCTGTTGCATCACTACCAATCGCAGTGTCGAAATGCACAAAAACGTTTCATATGCCGCAAATGCCCACTTAGATTTCGTTGGAAGCACAATCTGAAGATGCACTATAGAGAACATAGAAAAAATGTACAAACTCTTGAATGCGTAGAATGCGGTCGTAGCTACGAGGATAAAAAATCTTTTACGATACACATGCTTACTGTGCACACGGATGAGTCGAAGATGTTGCCTTGTCATTGGTGCAATCGGAAATTCTATCGACGTGACTATATGTTGAAACATCTAAAACGTCATGGGCTGAAAGAGGGTGACTTGCCACTAGCAAAGGCATTAATCGAAGCGACATCTAAACCAAATGGTGTAAAGCAAATTTACTGCAAAGTGTGTAATTTGCACTTCAATCGAATTTCGGAGCTTAGGGAACATTTGCTGATTGAATTAAAATTGGATATAAATCGACACGAACATTATGATTCATTGCGAAACTACTCTATTATGAATGAGTTGGGCTTCGAATTGCATGTTGATGATTCCGAGACAGATAATGAAGGCGGCACTAGTGCACAATCTCCCTATATATGTGAACTGTGTAAGGTGCAATGCAAACGcaaatttgaattatttcaACATCAGCGCTCCATGCATCGTTTCGAAACTTTGCCATATTCTTGTGGAAAATGCATATTTAAATCTGTATCATTGGATATTCTTGAGCACCACAAGCGTACACAATGTCTGAATATACAAAAACAGTTGTCATGCGAAAAgtgtaattttaaattcatGTGGCCGGAAAATCTTTCACGACATCTGGATTTACAGCATCCCGGTGAAATGAAGATTAACACCATCGTGGATATAGCGCACTCAACGAATTCAGGCACcctcacaacaacagcaatagatCCCGCACCAGCAATACTACCAACACCGTTGCAATGTCCTCATTGTGATCGCACCTACGTACAACAGTCTCGTCTTAATAACCACATACGCGATGTGCATATTGAAGGTGATCGTAAGAAGAAAGAAGCTGAACGTAAGTATCTTTGCTCGTTGTGTGGCAAAGAGTCACAATCCGCTGCCAATTTAGTCACTCATATGCGGAGGCACACTGGCGAAAAACCTTTCAAATGTGATATGTGCGAAATGGCTTTTCCTCGACACTCAGAGATGGTGCAGCATCGTCGAAAGCACACCGGAGAAAAGCCTTACCATTGCACAGTGTGTGGCAAGGACTTTGCGCGATCTGATAAATTAACCCGTCATATGTTGACGCACAGTGGCTTAAGGCCTCATAAATGTCACTTTTGCGATAAATGTTACAGGCAAGCAAAGGATCTCAAGTTACACCTTTTGCAACACACTGGTGAGTCGCCATTTGATTGCAATACTTGTGGTGAACGATTCATTCAAAGCGTCGCTCTGGAAAAGCACCGAATGATGAGAGGTCATTTCGATGATATGCAGTAA
- Protein Sequence
- MASTSVCRTCYVTSPKELFGLESCLKKYPSKMLLDLLVEVTKINIKLEHSDKLPQHLCCTCSLKLENAYEFVLQAREVNSRMLEYIKEPQADMKPNCDMDLQTEPLMELCTEQLVQVKIEDGTAENVAVEISEPLLEQYVFEQDAQENDNQADGSLDPLTTAEKPRCGPKSDERSKEISSSDELDELPLQQRRTYLKQTVKRKKKFKCDECEKSFSWQRNLNLHKRKHLPKDDWHPCPHCRKKFWRKDALQSHLRSHRHDTSDTFKSAATLSECKQAKTIDVNLCKPHGCKLIQCMICLQKYAKINELRNHLSEHPPIDSFPERSQETLQEMADSFNIDIKDVTENLLIARIRKDLSAGKYDNFYSITNQSGYELSLSSSETESDMDVESNDLKKANSQNCSYTCELCNVKCRRKHQLYEHQRKQHSWHEALHVCGRCDARFVSEQMLLHHYQSQCRNAQKRFICRKCPLRFRWKHNLKMHYREHRKNVQTLECVECGRSYEDKKSFTIHMLTVHTDESKMLPCHWCNRKFYRRDYMLKHLKRHGLKEGDLPLAKALIEATSKPNGVKQIYCKVCNLHFNRISELREHLLIELKLDINRHEHYDSLRNYSIMNELGFELHVDDSETDNEGGTSAQSPYICELCKVQCKRKFELFQHQRSMHRFETLPYSCGKCIFKSVSLDILEHHKRTQCLNIQKQLSCEKCNFKFMWPENLSRHLDLQHPGEMKINTIVDIAHSTNSGTLTTTAIDPAPAILPTPLQCPHCDRTYVQQSRLNNHIRDVHIEGDRKKKEAERKYLCSLCGKESQSAANLVTHMRRHTGEKPFKCDMCEMAFPRHSEMVQHRRKHTGEKPYHCTVCGKDFARSDKLTRHMLTHSGLRPHKCHFCDKCYRQAKDLKLHLLQHTGESPFDCNTCGERFIQSVALEKHRMMRGHFDDMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01196143;
- 90% Identity
- iTF_01196143;
- 80% Identity
- -