Basic Information

Insect: Phortica variegata
Gene Symbol: -
Assembly: GCA_001014415.1
Location: JXPM01003158.1:32760-37048[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 0.0013 0.11 13.0 0.7 1 23 45 67 45 67 0.97

2 27 8.1e-05 0.0068 16.8 1.3 1 23 73 95 73 95 0.98

3 27 0.15 12 6.5 0.2 2 23 123 144 122 144 0.96

4 27 0.00023 0.02 15.4 0.4 1 23 217 240 217 240 0.91

5 27 0.16 13 6.5 0.3 1 22 247 268 247 268 0.94

6 27 5.4 4.5e+02 1.6 0.4 1 20 277 296 277 298 0.92

7 27 0.012 0.97 10.0 0.3 1 23 332 354 332 354 0.95

8 27 0.0013 0.11 13.0 3.6 1 23 437 460 437 460 0.96

9 27 0.04 3.3 8.3 0.4 1 21 469 489 469 490 0.93

10 27 9.7e-05 0.0081 16.6 0.3 2 23 537 558 536 558 0.97

11 27 3.4e-05 0.0028 18.0 0.9 1 23 565 587 565 587 0.98

12 27 1.6 1.3e+02 3.3 3.9 2 23 616 637 615 637 0.96

13 27 0.03 2.5 8.7 2.9 1 23 725 748 725 748 0.96

14 27 0.0003 0.025 15.0 1.1 1 22 755 776 755 776 0.98

15 27 0.0049 0.41 11.2 1.3 1 23 785 807 785 807 0.98

16 27 2.2e-05 0.0018 18.6 4.0 1 23 820 842 820 842 0.98

17 27 5.5e-05 0.0046 17.3 0.4 3 23 851 871 849 871 0.97

18 27 0.012 0.98 10.0 0.3 3 21 899 917 898 918 0.95

19 27 0.00092 0.077 13.5 4.5 1 23 962 985 962 985 0.96

20 27 0.66 55 4.5 0.5 2 22 993 1013 992 1013 0.94

21 27 0.015 1.3 9.6 0.8 1 23 1022 1044 1022 1045 0.95

22 27 0.0023 0.19 12.2 6.0 1 23 1067 1090 1067 1090 0.98

23 27 4e-06 0.00033 20.9 0.2 2 23 1128 1149 1127 1149 0.95

24 27 0.0039 0.32 11.5 3.3 1 23 1155 1177 1155 1177 0.99

25 27 2e-07 1.7e-05 25.0 3.7 1 23 1183 1205 1183 1205 0.99

26 27 1.4e-07 1.2e-05 25.5 2.4 1 23 1211 1233 1211 1233 0.99

27 27 0.0014 0.12 12.9 0.1 1 22 1239 1260 1239 1263 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	0.0013	0.11	13.0	0.7	1	23	45	67	45	67	0.97
2	27	8.1e-05	0.0068	16.8	1.3	1	23	73	95	73	95	0.98
3	27	0.15	12	6.5	0.2	2	23	123	144	122	144	0.96
4	27	0.00023	0.02	15.4	0.4	1	23	217	240	217	240	0.91
5	27	0.16	13	6.5	0.3	1	22	247	268	247	268	0.94
6	27	5.4	4.5e+02	1.6	0.4	1	20	277	296	277	298	0.92
7	27	0.012	0.97	10.0	0.3	1	23	332	354	332	354	0.95
8	27	0.0013	0.11	13.0	3.6	1	23	437	460	437	460	0.96
9	27	0.04	3.3	8.3	0.4	1	21	469	489	469	490	0.93
10	27	9.7e-05	0.0081	16.6	0.3	2	23	537	558	536	558	0.97
11	27	3.4e-05	0.0028	18.0	0.9	1	23	565	587	565	587	0.98
12	27	1.6	1.3e+02	3.3	3.9	2	23	616	637	615	637	0.96
13	27	0.03	2.5	8.7	2.9	1	23	725	748	725	748	0.96
14	27	0.0003	0.025	15.0	1.1	1	22	755	776	755	776	0.98
15	27	0.0049	0.41	11.2	1.3	1	23	785	807	785	807	0.98
16	27	2.2e-05	0.0018	18.6	4.0	1	23	820	842	820	842	0.98
17	27	5.5e-05	0.0046	17.3	0.4	3	23	851	871	849	871	0.97
18	27	0.012	0.98	10.0	0.3	3	21	899	917	898	918	0.95
19	27	0.00092	0.077	13.5	4.5	1	23	962	985	962	985	0.96
20	27	0.66	55	4.5	0.5	2	22	993	1013	992	1013	0.94
21	27	0.015	1.3	9.6	0.8	1	23	1022	1044	1022	1045	0.95
22	27	0.0023	0.19	12.2	6.0	1	23	1067	1090	1067	1090	0.98
23	27	4e-06	0.00033	20.9	0.2	2	23	1128	1149	1127	1149	0.95
24	27	0.0039	0.32	11.5	3.3	1	23	1155	1177	1155	1177	0.99
25	27	2e-07	1.7e-05	25.0	3.7	1	23	1183	1205	1183	1205	0.99
26	27	1.4e-07	1.2e-05	25.5	2.4	1	23	1211	1233	1211	1233	0.99
27	27	0.0014	0.12	12.9	0.1	1	22	1239	1260	1239	1263	0.90

Sequence Information

Coding Sequence: ATGTCAGCCAAGCgtattgtaaaaaagaaaactaacgAGGACGATAGTGCTAGTGACAATGAGTATTTACCAACAAAGCGTCGACGTGGACGTCCTCGCAGTTCTAAACGACATTCCAACGGTCAGGGTCGCTTCGTGTGTGATGTGTGTGGTAAGACTTTTGCCTGGCACAAGGATGTGCAGCGGCATGCAAAGAGTCACACTTCAGAAGTCATGTTTATCTGTGATTTTTGTGGCAAGGGATTTCAACGTAAAGATAAATACGTCGATCACTTACGTAAACACACAAAGATCACTGATATTAAGATTAAACGACGCATGAACTTTTTAGAGCGTCTCTACTCTGCAAATCGTTTTAAATTGCTGGAATGTCGTCTTTGTGCTAATACCTTTAATACAATTCAGGATTTGGTGGAACATTTGAGTACGCATAAAGATGTAAGCACATTGGATGCTTTAAACATGGACAACGTCGTCATAAAAGAATTCTACGCAAGTGGTGATTTagatattgaaaaaattaaagaggCCATTTGTGCAGATATATCGGCTTTATCTTACAAAAAGTATTGCTTATTACTAAATGAATATGGCTATGAAATGAGTATTGATGATTCGGATGAAGATATACCGAATGGTGATGTTAAATATGTTTGTGAATTATGCGGTGAAAGTTTCACGCGAAAATATCAGACACTAGCTCATGCACAAGATAAACACAAGAAGGATGCGATGCCCTATCGGTGCAATGTTTGTAAACTATTCTTCATCTCAGGGCAATTGATTGAGCAACATACACGAACACAGTGTCGTAATagagacaaaaaatataagtgtCTTCGATGTCCGGGTAAATTTATGTGGGCAGAAAATTTGGAGCAACACAGATGTGCAAATAGTGTAAGGAAATTTGAACGATCTGATCAGGAAAAAGAGGATATGGAAGAGGATAACTTTTCGCATAATAAATTAGTTAGCTCGTGTAAGCCATTATTCGATTGTGGCTTGTGTATGCAAAGTTTTGACCGTTTAAAACAATTGCGCGCTCATGTCATGTTGCACCAGGACGGTAAAACAGAAGTAGATTACATAAACGGCAACTTCTTTAAACTATTTTACCCGGAGGGTGTTGATGGACGCGAGGCAGAACTGAGCACAAAAATCGCTGCAGATTTTGCAACACAAGACTTTGCACGTTATTATGCTGCACTATCCGAGAGGGGAGATGAATTGGACTTATATGATTCCGAGACAACAGTCGACGATGAACATGATAAATCTGATtctagccaacaacaaaaaccaacgtATATTTGTGGCATATGTGGAGAGACTTGCGGACGTCGCACGCACTTGTTGCATCATCAGGAGTCACAGCACGCTGAACAAGCGCTACAGTTGCCTTTCCCTTGCGAAAAGTGCGGTAAACAATATGTATGCGCTGAGTTGTTGGAACAACATCAACTGCGAGACTGTTTAAATCGACACAAGACGATACAATGCGATAAGTGTGATGCCCGTTTCGTTTGGCCGGCAAATTGTTCTGTGCACTGTAATATCAAGCATACAAACGCggaaaatgctgaaaataaaTTGGCAAGGAAATTACAGTGTGATCAGTGTGACAAGGTGTTTATATGGCCGAAAGATTTGACACGGCATAAACGAGTTCATTTGCCTGACACAGATCGTTATGAGTGTCCGTATTGTGAGCGTAAGTTTTTGCGCAAGGATAATATGCAATCGCACATTAAGGTGCACAGCGAGGAGGCAAAAAGATCGAAACCTGTCAAAGTGAAGACAGTTGACGCGCAGCTTTGTAAACCACACGGCTGTAAGCGTATAGAATGTATGATTTGTCATACCAAACATCGAAAAATTTCTGACTTGCGTACGCATCTCAGCACGCATCAATATACAGTATCatttgcagcagcaacggGTGATGACAACGCTATTGAGTCTATTTCACAGGCACTTTATCCAGAGGAAGAAACGCCGCTAATTGAAGAGCAGCTGATAAAACGCATCATGTCCGACATTAAAGCGAAACAATTTGAACGTTTTTATTCGATAACAAATGAAGCTGGCTATGAGCTGAGCTTGGAAAGTTCAGAAACAGAAAGTGATTCTGAACCGGAAGCGGATAATTCTTTAAGCAAGTCTAGTAAATACAATTGTGAACTGTgcgcatttaattttcaacgcAAATATCAACTGTACGCACATCAGCACGTGTATCATATCTGGAAAGAGGCGTCCTACACTTGTGCACATTGTAAAGCGCGTTTCATCAGCGACTCACTATTGGAGCATCACATGCGTACGCTGTGCCGGAACACACAGAAACGTTTTATGTGCCGAAAGTGTCCACAACGTTTTCGCTGGAAGGAGAATTTCCAAGCACACGGCAATACACACTGTGACAGCGTCGATGTGAAACAGGTCAATACAACTTTTGAGTGCCACGAGTGCAACCGAAGCTTCCAAATGCAAAAGGACTTGACCCGACACATGTTCATGCATTCACGTGAGTCGGCCATTTTTGGCTGTCAGTGGTGTCCTCGAAAATTCTATCGGCCCGGCAATCTGACACAGCACTTGGAGCGTCATGGCATTGCGCCGCATGAGTTGGCCTACGCTGAGACACTAATCAATGTACACAAATACGCCAATGGAAAAAAGGTGATTTTGTGTAAAGTGTGCAATATAAAATTCGAAAGAATAGCAGAGCTACGCCATCATCTACAAAATGATTTGGAAACACATCACCGTTATGAATCCATGTTGAATTATTCGATAACAAATCAATTGGGCTTTGAGTTGCATCTGGAAGACTCCGAAACCGATGATGAGGTAAAAGTTGAGGGTGTGCCTGCATCCTATACATGCGAGTTATGCCAATTGGTGTGTCGACGTAAACATGAGCTCTTTCGACATCAGCAGGCCATGCACAAGCTAGAGAAGATCGAGTTGAAGTGCACACATTGTGTTTTCAAAAGTGTATCGGCtGATTTGCTAGCTTATCATAAGCGGACACAATGtgaaaatgtagaaaaaaaatacaattgtacGGAATGTAATCTCAAATTCATGTGGGAGGATAACCTAGCGCAACACATACAACTCCATCATACGGATAGTGCAGGCGCACCAACACTAAAAGCTGAATTAGCACAGAATGAAGCAAAGCCGATCTTCCAATGTCCGCACTGCACATGCAAATATAATCGTAAGGATCGTCTCACCGCACATGTCAAGAAGATGCACGGCGTGAATGGTGGCAAAGACGCCACGACCAGCACAGCCGGCACATCGCGTAAAAGTTCTGTTGAAGTCTCAGCCGAACAGAAATTGAAAAAGGCGGATGACAAACGTTTTCTGTGTGCGTTTTGCGGTAAAGCAGTTAGCTCTTCATCAAATCTCATTATTCATATGCGTCGTCATACTGGTGAAAAACCATTTAAGTGTGACTTTTGTGAAATGGCTTTTGCGCGCTCCTCAGACATGCAATGCCACAGGCGTACGCATACCGGCGAACGTCCATACAAGTGCACTGTGTGCGATAAAGCCTTCTCACGCTCCTACAAACTGCATCAGCATATGCGTATACACAATGGGGAACGGCCGTACAAGTGTACGTACTGTGAGAAGAGTTTCACACAGTCCAACGATCTGACATTGCATATACGACGTCATACAGGTGAACGACCTTATGTGTGCGGCGTTTGTGGCGAGCGTTTCATACAAGGCACAGCACTGAAGAATCATCGAATTATGCGCGGCCACTTCGAAGAAGTTGATGCGCCGCCCACCAGGCGTACAATACTGGAACAGTTTAGAGTTAgttaa
Protein Sequence: MSAKRIVKKKTNEDDSASDNEYLPTKRRRGRPRSSKRHSNGQGRFVCDVCGKTFAWHKDVQRHAKSHTSEVMFICDFCGKGFQRKDKYVDHLRKHTKITDIKIKRRMNFLERLYSANRFKLLECRLCANTFNTIQDLVEHLSTHKDVSTLDALNMDNVVIKEFYASGDLDIEKIKEAICADISALSYKKYCLLLNEYGYEMSIDDSDEDIPNGDVKYVCELCGESFTRKYQTLAHAQDKHKKDAMPYRCNVCKLFFISGQLIEQHTRTQCRNRDKKYKCLRCPGKFMWAENLEQHRCANSVRKFERSDQEKEDMEEDNFSHNKLVSSCKPLFDCGLCMQSFDRLKQLRAHVMLHQDGKTEVDYINGNFFKLFYPEGVDGREAELSTKIAADFATQDFARYYAALSERGDELDLYDSETTVDDEHDKSDSSQQQKPTYICGICGETCGRRTHLLHHQESQHAEQALQLPFPCEKCGKQYVCAELLEQHQLRDCLNRHKTIQCDKCDARFVWPANCSVHCNIKHTNAENAENKLARKLQCDQCDKVFIWPKDLTRHKRVHLPDTDRYECPYCERKFLRKDNMQSHIKVHSEEAKRSKPVKVKTVDAQLCKPHGCKRIECMICHTKHRKISDLRTHLSTHQYTVSFAAATGDDNAIESISQALYPEEETPLIEEQLIKRIMSDIKAKQFERFYSITNEAGYELSLESSETESDSEPEADNSLSKSSKYNCELCAFNFQRKYQLYAHQHVYHIWKEASYTCAHCKARFISDSLLEHHMRTLCRNTQKRFMCRKCPQRFRWKENFQAHGNTHCDSVDVKQVNTTFECHECNRSFQMQKDLTRHMFMHSRESAIFGCQWCPRKFYRPGNLTQHLERHGIAPHELAYAETLINVHKYANGKKVILCKVCNIKFERIAELRHHLQNDLETHHRYESMLNYSITNQLGFELHLEDSETDDEVKVEGVPASYTCELCQLVCRRKHELFRHQQAMHKLEKIELKCTHCVFKSVSADLLAYHKRTQCENVEKKYNCTECNLKFMWEDNLAQHIQLHHTDSAGAPTLKAELAQNEAKPIFQCPHCTCKYNRKDRLTAHVKKMHGVNGGKDATTSTAGTSRKSSVEVSAEQKLKKADDKRFLCAFCGKAVSSSSNLIIHMRRHTGEKPFKCDFCEMAFARSSDMQCHRRTHTGERPYKCTVCDKAFSRSYKLHQHMRIHNGERPYKCTYCEKSFTQSNDLTLHIRRHTGERPYVCGVCGERFIQGTALKNHRIMRGHFEEVDAPPTRRTILEQFRVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01195444;
90% Identity: iTF_01195444;
80% Identity: -