Poka000423.1
Basic Information
- Insect
- Phortica okadai
- Gene Symbol
- -
- Assembly
- GCA_034638295.1
- Location
- CM067848.1:5513601-5515661[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.015 1.4 9.9 0.2 3 23 278 299 276 299 0.96 2 10 6.9 6.4e+02 1.5 1.1 6 23 308 325 308 325 0.95 3 10 0.0046 0.42 11.5 5.2 1 23 331 354 331 354 0.94 4 10 4.7e-05 0.0044 17.7 1.9 1 23 360 382 360 382 0.98 5 10 9.8e-07 9.1e-05 23.0 4.9 2 23 391 413 391 413 0.97 6 10 0.00035 0.032 15.0 1.9 3 23 422 443 420 444 0.94 7 10 0.16 14 6.7 0.2 2 23 453 474 452 474 0.94 8 10 0.32 30 5.7 4.9 1 23 483 505 483 506 0.95 9 10 1.2e-06 0.00011 22.8 0.8 1 23 510 532 510 532 0.99 10 10 0.0075 0.7 10.8 5.1 3 23 540 561 538 561 0.96
Sequence Information
- Coding Sequence
- ATGATATGCCGTTTGTGTTTTGTAGATCTTAAAGATTCTATAGACATATTCATTTCGAGCGTTAATAGCAATAATCACGAAGTGGTACTTTTAATTAagaaatatttacttatagaGTTAAAGCCGGGTGATCCAGTATCctcaaaaatatgcaaaacttGTTGGTCCACATTGAGAGATTTTCATGAGTTCTATCGGATGGTTACCGAGAAACAACAAGGAATACAGCTGAAGACCGAAGCAACAGAATGGATCGAGGCTTGGCAAGCGCCTGAAGTGCAATTGATCGAAATACCTAAAGAAGCTGTACTTGAAGAGTGTGACACACTAGGCGATGTCAAGGATGAGACGCTTTGTGAACCAATAATCGATGCAAATCTACATGGTTATAACAACGAATGCCACGAAGCAACAGACACCAATACAATTGATGAGAACAATGACAAGGCATCTGAATGTGCAAGCGACGACTCaaagtcaaaaacaaaaaattgcgaAGATGTAACGTTAAAAGCTAAGAAATGTTTAGCCAAAAAGCGGCTAGATGCGCAAGCATCAAAGACAACGAAAAGTCGACGACAAAacacaaagacaacaaaagcattaACATCACCACCTTTGACCCGAAAGTTGCGTATGCGTTTACGTGTTATCGATGCAGAAACAATACCAACTGCAACAGCTGAAGAGACGCCGGCCAAACGCAAAGTGGGGAGGCCGCGTTTAAAATCAGTGCAGACACCAACGGCAGAATCACGTGCAAAATTTGATCGCCGCATGCGTATCAGCACAGATTTAGACAAGTACATCAATGAAAATGTAAAGCTTGACTGTGCCGTTTGTAAGGTGCCACTTAAGGATTTTGGTGAGCTTAAGCGGCATTTTCGAACTGAACACAATTGCGTTGGCTACGCGATGTGTTGTAATAATCGCTACAGAAAACGATCGCTATACGTTGATCATTTGTGTTGGCACAAGGACCCAGAATACTTTTATTGTGATCAGTGTAAGAAAACATTTGTGAGTCGCAACTGTCTCCGTTTGCATAATTTGCGCTATCACACCGAGGAGATGACACACGAATGCAAGTTGTGCCCAAAACGTTTCGCCAAAGGTTTTATGCTTACACAGCACATGCGTGTGCATCTTGCCGATCGTGAACGCACTGAACAATGCAAACACTGTGATAAGACCTTTCGCACGCCACACGAACTGCGTGCTCATGTCCGTCGCATGCATGATGAGTCGAATGCGCCAATTATTTGTGATATTTGTGGTGCTAACTTTCGCACGAAACAAAACTTTCACGTACATAAACGTGCCGTCCATCATGAGGGGCCGCAATTGCCCGAGGTGCAGTGTCCAGTCTGTGCGCGTTGGCTGCGTGATGAGAACAGTTTGCGCAAACACATGTACTTTCATCGTGAATCGGATCAGCCAGGTGCCTACAAGTGTAATGAATGTGGAGCTGTTAAGTCTTCACGTCATAAATTGACCTTTCACATACGCTATCATCACTCAAAGCGTTACAAGTGCACGCTGTGCGAAAAGGAGTTCAAACAATCAGTTACTTTAACTGAGCATATGGCCACACATACTGGTGTGGATTTGTATGGCTGTCCGTTTTGTGAGCGTACTTTTAAATCGCACGCAAACATGCACAaccacaaaaagaaaatgcacCCAGATCAGTGGGTGCGTAAGTATTCTGTACCTAGTCGACCCACCGAAGAGATTGAATCTGGAGATGCATGTGATTCGACACAAAATCCGAACATTGAAATGACCAAAAAAGTGGGCGATGCGCAGTGGTAA
- Protein Sequence
- MICRLCFVDLKDSIDIFISSVNSNNHEVVLLIKKYLLIELKPGDPVSSKICKTCWSTLRDFHEFYRMVTEKQQGIQLKTEATEWIEAWQAPEVQLIEIPKEAVLEECDTLGDVKDETLCEPIIDANLHGYNNECHEATDTNTIDENNDKASECASDDSKSKTKNCEDVTLKAKKCLAKKRLDAQASKTTKSRRQNTKTTKALTSPPLTRKLRMRLRVIDAETIPTATAEETPAKRKVGRPRLKSVQTPTAESRAKFDRRMRISTDLDKYINENVKLDCAVCKVPLKDFGELKRHFRTEHNCVGYAMCCNNRYRKRSLYVDHLCWHKDPEYFYCDQCKKTFVSRNCLRLHNLRYHTEEMTHECKLCPKRFAKGFMLTQHMRVHLADRERTEQCKHCDKTFRTPHELRAHVRRMHDESNAPIICDICGANFRTKQNFHVHKRAVHHEGPQLPEVQCPVCARWLRDENSLRKHMYFHRESDQPGAYKCNECGAVKSSRHKLTFHIRYHHSKRYKCTLCEKEFKQSVTLTEHMATHTGVDLYGCPFCERTFKSHANMHNHKKKMHPDQWVRKYSVPSRPTEEIESGDACDSTQNPNIEMTKKVGDAQW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01196243;
- 90% Identity
- iTF_01196243;
- 80% Identity
- -