Poka005311.1
Basic Information
- Insect
- Phortica okadai
- Gene Symbol
- sba
- Assembly
- GCA_034638295.1
- Location
- CM067849.1:7060544-7078453[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-08 3.7e-05 23.6 0.0 5 59 169 214 166 236 0.84 2 2 0.13 4.1e+02 1.0 0.1 12 33 1559 1580 1549 1582 0.88
Sequence Information
- Coding Sequence
- ATGGCGGCAACTTCGGCTGGCCAACAGCAAttgccgcagcagcagcaacaacaacaacaaaaaAGCTatcagcaacaccaacaacaacagcatcagacGAAATTTGTACCGCGGGTCGttacaaatgcaacaacaacaaaaccaataacggcaacaaaaacaatacatcAACAACAGACACAACATTTACCAGCAGGTCTGGTAAATGGCAACAGCGTCattaccaccaccaccaccactgtGCAACCGAAGACGACGCATGTGTTTCTCACAccgccacagcaacaacaacaacagcaacaccagcaacaacaacaactgcaagtTCAGCGGCCAACACAAATCAAGCTGCCACTCAAAACAACGACAGCAGTTGCACAGTGTATGCCACCAACGATTGCAATGCGTCAAATGAGCCAGAATAATTTGAATGTTCGGCATGTGGCAAAACAGGCGTTGTCAGGTGTCGATGGTGCTGCGACCGTTTTGCCGGACACAGGCCCGTCCAACTGTCATGCAAATCTAGCGCCCGGCTGGCGACGACTTACGTCAAATAATGAAGTGGCCTATATCAGTCCCACCGGCGCCACATTACGTACGCATTACCAAATCAAGGATTATCTGCTGTCACAGGGTACCTGTAAATGTGGTCTGCCGTGCCCGCTGCGTCCGgattatttctttgactttaaTGCACAGGTGCCGAACATGCTACTCTCGGTCGAACGGAGCTGCAAGCCGAACGATGATGCGACGTCTGCCTCCAAAGGGCATGAGGCTGATTCAGCGTTATGTTTGCATAGGCAACGTTTTCTTGAATCTCAACAATTGCATGCCATGCCCATGTCAGCAACGGGAATTGCCTCAACACATGCAGTCGTGATGGATGTATTTGCGGCGTCGTCGTCCTCGCCTGCGTCGGCAGcctcgtcgtcatcgtcagcaACGTCGTCGGATGCAATGAGCAAAGATACAGTTGAATGTCGTAAATTTGCCATTAGAAAGGCAACTGCAACAATGCaaacgagcaacaacaacaacaataataacggCAGCaaccaacaaaagcaaacctttgcaacaaatacaaacacaaatgtGAATGTGAATGCCTCTAGTCAAGTCCATAAAATgcaaccgcaacaacaacaacaacagcaacatatgCTACCGAATGTGATAAGAACAACCAATGCAAGTGTGGAGATGAAGTtgctgccaccgccgccgtcgtcgtcgtcatcgtcaatgATTACATCGACAACTGtgacggcaacgacaacaacaatgccacaGACGAACTCTTCGCATGCAAGTGCAGCTGCTCATGATGCATCGAATCGCAGCGAGTCAGATTGGCAGCGGATTAGCggccaacaaccacaacagcaacaacaacaacagcagcaaatgaaaaaacagCAACCGAATTTCAAAGACGACCCAACGGGTTACTTGCAACAGCAAACCGCCTTGTTGCACAACTCAATGCTGAATGTAACAATGCAGGATGGCGTAGTTCTGCCATCGCACGACGCCAAGCAAAAGGCTGATGAGTCGATTGCTGTTGCCATTGCCGTGACAGTGCCCGAGGACAAAGAgacaacgacgatgacgaaCGTGCAACAGCGATTGGACGGCGATAGAGCGAGGCAGCTGGTCGCTGAGGCGGCGGCAAGCACACAACCGTCACAGCAGCAAATGCAACGGAGAATGTCACTTTATCCCGCTGGCGGCGGCAAGTGGGATTTCGAGCAAATAGCGCGTTTTGATAGCGAATCAACGCTTGTCAACATGGACGCATTGCAACGGCCGAGTCTCAAGTCGCATTCGCAGAAGGCGCAAATCACATCGATACGCGTCGTGCCCGCACCGCAGCAGTCGCCGGTGTCGTCGAGCACGACATTTGCAGCACGGCTGGTGCAGCCGGAGGCAAAGCGCAACAATGCCGATGTCATTATGCGACGGCCCGAGCAGGTGGGCGCCATTTCTACAAGCTATGAGAGTCCGCGGCATTGTCTGTCCGCGTCGCCGTCAGAGATGTTGGAAACAGCACAGGTGACGACGGTTAAAGCATTGCCGGTGTCATCGCCGGCGCCCTCGCCATCGCCCTCACATGTTCACGCGGCACAAGCAGCGACGGTTACGCACGCCAAGCCGCAAGTGTTGCAGATGCGCGTGCATCCGCCACTGTCACAACATCAACACGTGCAGCAGGTGCGTGTTGTgcgccaacagcagcagccgcaaGGTCAAGTGCGTACGCCGactgcggcaacaacaacagtcgtGCCGGCGCTCACACGTAACTCGGTGACGAGCCTTGCTGGCATGCGTGCGGCGtcagcaacgacgacgacatcgCCCAGTGTGCAGGCACAAGCTCAGACCGTGCTCAGAGCCAACGAGGCGGCCACCAATGGTCAGATCATCATGACATCGACCGGTCAGTTGCTCGTCATACCCGGCAATGGCAAAACGCACatacagcaccaacaacagccgcaacaacaccaccagcagcaacagcagcagcagcgtcaACATTTGATAGTCAACAGCAATGGCAGTCCGACGACGGCAACTGTGGCCGGTCAGCCGACCAGTGTCATAATCCAGCAACAAGCCACGCCCACGGAGCTAACACAGATCGCTGCGAACAGCGGCGCCGGCATTATACTGCAGAACGGACAGACGGCGCAGAACCACAGTTACATAGTGAGCAGCCAGCCgaccaccagcagcagcaacaacaatgctgcaACGCCGCTGCAATCGACAACGGTGATACTCAATTCTGGTCAGAATATATTAACCACCAATAGTGCAAAACTGCTTACGGCCAATTCGAGCAACATACTGCACGCCGGCAGCCAGCAAATCCTATCGGGCAATCAGTTGATAGCGGCACAGGGTCAGCCGGCGGCAACAATTGGCCAGCAAACCGTTGTGCTCAACACGCTGCCCAACGGCGGCTACATtgtgcaacagcagcagccacagcagcaacagcaacagcaccaacatcatcctcatcatcaacagcagcaacaacagaacaCGCCAGCGACCCAGCAACAATTTGCGTCGCTCGATGGCCAAATAATgcagttgcaacaacaacaacaacaacagacacaaCAAATAATACTGCATTCACCAGATGGCAAACGGCGTGGTAAGAAGCGTAAACCGTCGCTCAGCAATATTTCGCCAAATAGTTCGCCAAGCAAATCCATATCGCCACAAATATCGCCCAGCATTCCCAATCAAACGCCGACTGCGGCCGCTGCTGCCTTGCTCCATCAgcaacaccaccaccaacagcaccaacagcagcaacagcatcaccagcagcaacatcagtcCCAGCTGGTGCAAATAGCGGCGCCGGCAACCGCAACTCAGTTCCCGCAACAATTTCAACTCAGTCCGGGCATTCAGGGCattgttgttaataaaacGGCTACAACGGCGGCGCCACAACCGCAACAGTTGCTACTGCAAAACGGTCAAATCATTCAGCCGGTGAATCTTATTGGCCAACAGCTAATAATGCCCACCGGCTTGATGATGGCGCCAGACACAACATTGCTGCAAATACAGAATGTCGGCACGTGCGCCCAGACCAGCATACTGACGCCGCAGGGACCGATGATGTTGCGCACGCCATCACCGCAAAACAAGCCATTTATATCACCCACAACGCCCAGTCAACAGTTCATTGTTGGCGCCAATGGTCAGCTCAGTCCGATTGGCCAGATATACTCGACACACATGGGCCTTGTGCTGCCTGCCGGCCAGCAAACGTCCGCAACGACAACCACATTCATGCAGGCCAGTCCCTCCATAcaattgcagcagcagcagcagcaacagcagcagcaacagcaacactcaacacaacaacacaacataaGCATTCAACAGGCAACATCCGGTGTCCTGCAAACATCGTCCGTTGCCAGTGAGCATAAACCGTTCAATGACCAGACGAGTGGTCAACGTGCCGCTGCTGCTAGTCCACCGGATACAACAACTTGCAGTCCACGGAGTCCAGATCGACCGCCGAGCCATCGAAGTACCGGAAGTGACATGGTGCAGTGCGTGTCCAGTTCGGAGCCTGATGCTGCCGTGTCACCACAGAGCGCCGACAGCAGACAGTCACCATCGTCCACTGACTGTGAACGTGGAGGCAATTTTGTGACGAACATCTTCAATTCGCCCGCGCACATTTACAAGCCACCAGAAGCGAAAATGCGTCGCATACAAACATCGTCTCAACATGGCGTCAGCATGAGTCAGGCTACTATAGCCAAGGCGGCGACATCAGCGAACACAGGTAGTTcataccaccaccaccacaaccaccaccaacatcatcagcagcaacaacaacaacaacaacatagtcGGCTGAGTAATCAAACCTCTCATGCAGACATCATAATCCCGCATGCTCATAGTAATCCAATAGCTAACATTGACTGCTATGACTCGCCGACACATTCACCGACCACAACAATAGGCAGCCAGACGCCACCACCGTCGACCAACGCACAACGACCGTCCGAACCGCAAGAGCAACAGGCCACTGCCGATGGTCGGCCGACAGCAGTAACGCCATcgaagcaacagcagcagcgcacACCAAACAAACGTGTACGGACGCGTCAACGTGGCTGGCGGAATGCGGTAACGGTCACAagcaacggcagcaacaacaacggcacagATGCATGTATTAGCGAAATGCCGCCACGTTCGTTTGCCATTGGCGAGCTCATCTGGGGGCCAGCACGTGGTCATCCGGCATGGCCGGGCAAAATAGTGAAAATGCCTGATGGCGTTTGCACGCCCTCGCAGCAATTCGATCATGTTTGGGTGCAGTGGTTCGGCGGTGGTGGCAGATCGACGTCAGAGCTAATACCAGTCAATTCGTTGCAAAGCCTTTCCGAGGGACTGGAGGCGCACCACAAAGCACAGAAGGATACAAGAAAGAGCCGAAAGCTGAATTCGCAGCTCGAGCGTGCTATACAAGAAGCAATGATTGAGTTGGATCACATTTCAGCTTCATCGACGTCGACAAGTCCggcgccaacgccaacgccagcATTGGCCACTAGCACCAGCACTAACcaagccaacagcaacaagcaacTGCAACAGCCGTCATCGACAAGCAgttgcggcagcagcagcggaaCGAGCCGCAGCAAACGCAACACAGCGAGCGCAACAGCGGCTGGCGGCGGCACAGTCAATGTGTCTGCTCCGTGCAGTCTCGCTGCGACCAACACCAGCGTAGTGCTGACATCTGCCGGTACGCTGCACACAATATTCAATGCGGCTTCTTCGacccaacagcagcaacagcgtgTGAAGCCCATTCGCATTGCACCGGCACCGGCGCCATCGTCTGTGTCAGTGCAGCGCACGCCGGATAAGCTTAACAAATGA
- Protein Sequence
- MAATSAGQQQLPQQQQQQQQKSYQQHQQQQHQTKFVPRVVTNATTTKPITATKTIHQQQTQHLPAGLVNGNSVITTTTTTVQPKTTHVFLTPPQQQQQQQHQQQQQLQVQRPTQIKLPLKTTTAVAQCMPPTIAMRQMSQNNLNVRHVAKQALSGVDGAATVLPDTGPSNCHANLAPGWRRLTSNNEVAYISPTGATLRTHYQIKDYLLSQGTCKCGLPCPLRPDYFFDFNAQVPNMLLSVERSCKPNDDATSASKGHEADSALCLHRQRFLESQQLHAMPMSATGIASTHAVVMDVFAASSSSPASAASSSSSATSSDAMSKDTVECRKFAIRKATATMQTSNNNNNNNGSNQQKQTFATNTNTNVNVNASSQVHKMQPQQQQQQQHMLPNVIRTTNASVEMKLLPPPPSSSSSSMITSTTVTATTTTMPQTNSSHASAAAHDASNRSESDWQRISGQQPQQQQQQQQQMKKQQPNFKDDPTGYLQQQTALLHNSMLNVTMQDGVVLPSHDAKQKADESIAVAIAVTVPEDKETTTMTNVQQRLDGDRARQLVAEAAASTQPSQQQMQRRMSLYPAGGGKWDFEQIARFDSESTLVNMDALQRPSLKSHSQKAQITSIRVVPAPQQSPVSSSTTFAARLVQPEAKRNNADVIMRRPEQVGAISTSYESPRHCLSASPSEMLETAQVTTVKALPVSSPAPSPSPSHVHAAQAATVTHAKPQVLQMRVHPPLSQHQHVQQVRVVRQQQQPQGQVRTPTAATTTVVPALTRNSVTSLAGMRAASATTTTSPSVQAQAQTVLRANEAATNGQIIMTSTGQLLVIPGNGKTHIQHQQQPQQHHQQQQQQQRQHLIVNSNGSPTTATVAGQPTSVIIQQQATPTELTQIAANSGAGIILQNGQTAQNHSYIVSSQPTTSSSNNNAATPLQSTTVILNSGQNILTTNSAKLLTANSSNILHAGSQQILSGNQLIAAQGQPAATIGQQTVVLNTLPNGGYIVQQQQPQQQQQQHQHHPHHQQQQQQNTPATQQQFASLDGQIMQLQQQQQQQTQQIILHSPDGKRRGKKRKPSLSNISPNSSPSKSISPQISPSIPNQTPTAAAAALLHQQHHHQQHQQQQQHHQQQHQSQLVQIAAPATATQFPQQFQLSPGIQGIVVNKTATTAAPQPQQLLLQNGQIIQPVNLIGQQLIMPTGLMMAPDTTLLQIQNVGTCAQTSILTPQGPMMLRTPSPQNKPFISPTTPSQQFIVGANGQLSPIGQIYSTHMGLVLPAGQQTSATTTTFMQASPSIQLQQQQQQQQQQQQHSTQQHNISIQQATSGVLQTSSVASEHKPFNDQTSGQRAAAASPPDTTTCSPRSPDRPPSHRSTGSDMVQCVSSSEPDAAVSPQSADSRQSPSSTDCERGGNFVTNIFNSPAHIYKPPEAKMRRIQTSSQHGVSMSQATIAKAATSANTGSSYHHHHNHHQHHQQQQQQQQHSRLSNQTSHADIIIPHAHSNPIANIDCYDSPTHSPTTTIGSQTPPPSTNAQRPSEPQEQQATADGRPTAVTPSKQQQQRTPNKRVRTRQRGWRNAVTVTSNGSNNNGTDACISEMPPRSFAIGELIWGPARGHPAWPGKIVKMPDGVCTPSQQFDHVWVQWFGGGGRSTSELIPVNSLQSLSEGLEAHHKAQKDTRKSRKLNSQLERAIQEAMIELDHISASSTSTSPAPTPTPALATSTSTNQANSNKQLQQPSSTSSCGSSSGTSRSKRNTASATAAGGGTVNVSAPCSLAATNTSVVLTSAGTLHTIFNAASSTQQQQQRVKPIRIAPAPAPSSVSVQRTPDKLNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01195994;
- 90% Identity
- iTF_01195994;
- 80% Identity
- -